Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s42003-020-0842-3

https://doi.org/10.1038/s42003-020-0842-3

Loss of the branched-chain amino acid transporter CD98hc alters the development of colonic macrophages in mice

Cited by: 17
Author(s): Philipp Wuggenig, Berna Kaya, Hassan Melhem, C. Korcan Ayata, Swiss Ibd Cohort Investigators, Petr Hrúz, Emre Sayan, Hideki Tsumura, Morihiro Ito, Julien Roux, Jan Hendrik Niess
Published: over 4 years ago

Software Mentions 10

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
Papers that mentioned: 177
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
bioconductor: SingleR
Reference-Based Single-Cell RNA-Seq Annotation
Papers that mentioned: 97
cran: dynamicTreeCut
Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
Papers that mentioned: 49
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: dynamicTreeCut
Dynamic Tree Cut
Papers that mentioned: 49