Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1851-8

https://doi.org/10.1186/s13059-019-1851-8

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer

Cited by: 44
Author(s): Dharmesh D. Bhuva, Joseph Cursons, Gordon K. Smyth, Melissa J. Davis
Published: about 5 years ago

Software Mentions 14

bioconductor: dcanr
Differential co-expression/association network analysis
Papers that mentioned: 3
bioconductor: EBcoexpress
EBcoexpress for Differential Co-Expression Analysis
Papers that mentioned: 5
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: RCy3
Functions to Access and Control Cytoscape
Papers that mentioned: 22
bioconductor: singscore
Rank-based single-sample gene set scoring method
Papers that mentioned: 13
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
cran: COSINE
COndition SpecIfic sub-NEtwork
Papers that mentioned: 15
cran: doSNOW
Foreach Parallel Adaptor for the 'snow' Package
Papers that mentioned: 19
cran: GeneNet
Modeling and Inferring Gene Networks
Papers that mentioned: 87
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: nleqslv
Solve Systems of Nonlinear Equations
Papers that mentioned: 7
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555