Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: COSINE
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/COSINE
COndition SpecIfic sub-NEtwork
4 versions
Latest release: over 10 years ago
0 downloads
Papers Mentioning COSINE 15
10.1186/s13059-019-1851-8
Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancerCited by: 44
Author(s): Dharmesh D. Bhuva, Joseph Cursons, Gordon K. Smyth, Melissa J. Davis
Software Mentions: 14
Published: about 5 years ago
10.1371/journal.pcbi.1009263
A multi-objective genetic algorithm to find active modules in multiplex biological networksCited by: 7
Author(s): Elva María Novoa-del-Toro, Efrén Mezura-Montes, Matthieu Vignes, Morgane Térézol, Frédérique Magdinier, Laurent Tichit, Anaı̈s Baudot
Software Mentions: 6
Published: about 3 years ago
10.1371/journal.pone.0060045
The Structure of a Gene Co-Expression Network Reveals Biological Functions Underlying eQTLsCited by: 37
Author(s): Nathalie Villa-Vialaneix, Laurence Liaubet, Thibault Laurent, Pierre Chérel, Adrien Gamot, Magali SanCristobal
Software Mentions: 6
Published: over 11 years ago
10.3389/fgene.2019.00159
A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene SignaturesCited by: 22
Author(s): Adib Shafi, Tin Nguyen, Azam Peyvandipour, Hung Son Nguyen, Sorin Drăghici
Software Mentions: 4
Published: over 5 years ago
10.3389/fgene.2019.00155
A Comprehensive Survey of Tools and Software for Active Subnetwork IdentificationCited by: 42
Author(s): Hung Son Nguyen, Sangam Shrestha, Duc Tran, Adib Shafi, Sorin Drăghici, Tin Nguyen
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-017-3495-y
Active module identification in intracellular networks using a memetic algorithm with a new binary decoding schemeCited by: 4
Author(s): Dong Li, Zhisong Pan, Guyu Hu, Zexuan Zhu, Shan He
Software Mentions: 3
Published: over 7 years ago
10.1186/s12859-019-2829-y
GeneSurrounder: network-based identification of disease genes in expression dataCited by: 5
Author(s): Sahil D. Shah, Rosemary Braun
Software Mentions: 3
Published: over 5 years ago
10.1177/07487304211032336
The Neuropeptide PDF Is Crucial for Delaying the Phase of <i>Drosophila’s</i> Evening Neurons Under Long Zeitgeber PeriodsCited by: 10
Author(s): Koustubh M. Vaze, Charlotte Helfrich‐Förster
Software Mentions: 2
Published: about 3 years ago
10.1038/srep38860
Improved genome-scale multi-target virtual screening via a novel collaborative filtering approach to cold-start problemCited by: 42
Author(s): Hansaim Lim, Paul A. Gray, Lei Xie, Aleksandar Poleksić
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41598-018-34429-0
Exploring the potential of PROCOSINE and close-range hyperspectral imaging to study the effects of fungal diseases on leaf physiologyCited by: 22
Author(s): Julien Morel, Sylvain Jay, Jean‐Baptiste Féret, Adel Bakache, Ryad Bendoula, Françoise Carreel, Nathalie Gorretta
Software Mentions: 2
Published: about 6 years ago
10.1186/s12859-017-1567-2
Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction networkCited by: 26
Author(s): Hao He, Dongdong Lin, Jigang Zhang, Yuping Wang, Hong‐Wen Deng
Software Mentions: 2
Published: over 7 years ago
10.1186/s13321-018-0303-x
A new chemoinformatics approach with improved strategies for effective predictions of potential drugsCited by: 9
Author(s): Ming C. Hao, Stephen H. Bryant, Yanli Wang
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0104993
WMAXC: A Weighted Maximum Clique Method for Identifying Condition-Specific Sub-NetworkCited by: 20
Author(s): Bayarbaatar Amgalan, Hyunju Lee
Software Mentions: 1
Published: over 10 years ago
10.1186/s12911-019-0895-8
Using an analogical reasoning framework to infer language patterns for negative life eventsCited by: 1
Author(s): Jheng-Long Wu, Xifeng Xiao, Liang-Chih Yu, YE Shao-zhen, K. Robert Lai
Software Mentions: 1
Published: about 5 years ago
10.1186/s12859-021-04127-2
AutoDTI++: deep unsupervised learning for DTI prediction by autoencodersCited by: 22
Author(s): Seyedeh Zahra Sajadi, Mohammad Ali Zare Chahooki, Sajjad Gharaghani, Karim Abbasi
Software Mentions: 1
Published: over 3 years ago