Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: COSINE

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/COSINE

COndition SpecIfic sub-NEtwork
4 versions
Latest release: over 10 years ago
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Papers Mentioning COSINE 15

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer
Cited by: 44
Author(s): Dharmesh D. Bhuva, Joseph Cursons, Gordon K. Smyth, Melissa J. Davis
Software Mentions: 14
Published: about 5 years ago

10.1371/journal.pcbi.1009263

A multi-objective genetic algorithm to find active modules in multiplex biological networks
Cited by: 7
Author(s): Elva María Novoa-del-Toro, Efrén Mezura-Montes, Matthieu Vignes, Morgane Térézol, Frédérique Magdinier, Laurent Tichit, Anaı̈s Baudot
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0060045

The Structure of a Gene Co-Expression Network Reveals Biological Functions Underlying eQTLs
Cited by: 37
Author(s): Nathalie Villa-Vialaneix, Laurence Liaubet, Thibault Laurent, Pierre Chérel, Adrien Gamot, Magali SanCristobal
Software Mentions: 6
Published: over 11 years ago

10.3389/fgene.2019.00159

A Multi-Cohort and Multi-Omics Meta-Analysis Framework to Identify Network-Based Gene Signatures
Cited by: 22
Author(s): Adib Shafi, Tin Nguyen, Azam Peyvandipour, Hung Son Nguyen, Sorin Drăghici
Software Mentions: 4
Published: almost 6 years ago

10.3389/fgene.2019.00155

A Comprehensive Survey of Tools and Software for Active Subnetwork Identification
Cited by: 42
Author(s): Hung Son Nguyen, Sangam Shrestha, Duc Tran, Adib Shafi, Sorin Drăghici, Tin Nguyen
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-017-3495-y

Active module identification in intracellular networks using a memetic algorithm with a new binary decoding scheme
Cited by: 4
Author(s): Dong Li, Zhisong Pan, Guyu Hu, Zexuan Zhu, Shan He
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12859-019-2829-y

GeneSurrounder: network-based identification of disease genes in expression data
Cited by: 5
Author(s): Sahil D. Shah, Rosemary Braun
Software Mentions: 3
Published: over 5 years ago

10.1177/07487304211032336

The Neuropeptide PDF Is Crucial for Delaying the Phase of <i>Drosophila’s</i> Evening Neurons Under Long Zeitgeber Periods
Cited by: 10
Author(s): Koustubh M. Vaze, Charlotte Helfrich‐Förster
Software Mentions: 2
Published: over 3 years ago

10.1038/srep38860

Improved genome-scale multi-target virtual screening via a novel collaborative filtering approach to cold-start problem
Cited by: 42
Author(s): Hansaim Lim, Paul A. Gray, Lei Xie, Aleksandar Poleksić
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-34429-0

Exploring the potential of PROCOSINE and close-range hyperspectral imaging to study the effects of fungal diseases on leaf physiology
Cited by: 22
Author(s): Julien Morel, Sylvain Jay, Jean‐Baptiste Féret, Adel Bakache, Ryad Bendoula, Françoise Carreel, Nathalie Gorretta
Software Mentions: 2
Published: about 6 years ago

10.1186/s12859-017-1567-2

Comparison of statistical methods for subnetwork detection in the integration of gene expression and protein interaction network
Cited by: 26
Author(s): Hao He, Dongdong Lin, Jigang Zhang, Yuping Wang, Hong‐Wen Deng
Software Mentions: 2
Published: almost 8 years ago