Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: singscore
https://packages.ecosyste.ms/registries/bioconductor.org/packages/singscore
Rank-based single-sample gene set scoring method
1 version
Latest release: 10 months ago
3 dependent packages
51,153 downloads total
Papers Mentioning singscore 13
10.1186/s13059-019-1851-8
Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancerCited by: 44
Author(s): Dharmesh D. Bhuva, Joseph Cursons, Gordon K. Smyth, Melissa J. Davis
Software Mentions: 14
Published: over 4 years ago
10.12688/f1000research.19236.3
Using singscore to predict mutation status in acute myeloid leukemia from transcriptomic signaturesCited by: 11
Author(s): Dharmesh D. Bhuva, Momeneh Foroutan, Yi Xie, Ruqian Lyu, Joseph Cursons, Melissa J. Davis
Software Mentions: 13
Published: almost 5 years ago
10.1186/s13058-021-01451-6
Transcriptome and genome evolution during HER2-amplified breast neoplasiaCited by: 3
Author(s): Peipei Lu, Joseph W. Foley, Chunfang Zhu, Katherine McNamara, Korsuk Sirinukunwattana, Sujay Vennam, Sushama Varma, Hamid Fehri, Arunima Srivastava, Shirley Zhu, Jens Rittscher, Parag Mallick, Christina Curtis, Robert B. West
Software Mentions: 11
Published: about 3 years ago
10.3390/cancers13122903
Integrative Transcriptomic Analysis Reveals Distinctive Molecular Traits and Novel Subtypes of Collecting Duct CarcinomaCited by: 6
Author(s): Chiara Gargiuli, Pierangela Sepe, Anna Tessari, Tyler Sheetz, Maurizio Colecchia, F.G.M. De Braud, Giuseppe Procopio, Marialuisa Sensi, Elena Verzoni, Matteo Dugo
Software Mentions: 11
Published: about 3 years ago
10.7554/eLife.59073
Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanismCited by: 15
Author(s): Krystal A. Orlando, Amber K Douglas, Aierken Abudu, Yemin Wang, Basile Tessier‐Cloutier, Weiping Su, Alec Peters, Larry S. Sherman, Regan P. Moore, Vinh Nguyen, Gian Luca Negri, Shane Colborne, Gregg B. Morin, Friedrich Kommoss, Jessica D. Lang, William P.D. Hendricks, Elizabeth A. Raupach, Patrick Pirrotte, David G. Huntsman, Jeffrey M. Trent, Joel S. Parker, Jesse R. Raab, Bernard E. Weissman
Software Mentions: 9
Published: over 3 years ago
10.1186/s12859-018-2435-4
Single sample scoring of molecular phenotypesCited by: 230
Author(s): Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
Software Mentions: 7
Published: over 5 years ago
10.1186/s12879-020-05598-z
Comparing tuberculosis gene signatures in malnourished individuals using the TBSignatureProfilerCited by: 9
Author(s): W. Evan Johnson, Aubrey Odom, Chelsie Cintron, Mutharaj Muthaiah, Selby Knudsen, Noyal Mariya Joseph, Senbagavalli Prakash Babu, Subitha Lakshminarayanan, D. Graham Jenkins, Yue Zhao, Ethel Nankya, C. Robert Horsburgh, Gautam Roy, Jerrold J. Ellner, Sonali Sarkar, Padmini Salgame, Natasha S. Hochberg
Software Mentions: 6
Published: over 3 years ago
10.3390/ijms22115744
BRAF Inhibitors Induce Feedback Activation of RAS Pathway in Thyroid Cancer CellsCited by: 8
Author(s): Elisa Bonaldi, Chiara Gargiuli, Loris De Cecco, Arianna Micali, Maria Grazia Rizzetti, Angela Greco, Maria Grazia Borrello, Emanuela Minna
Software Mentions: 5
Published: about 3 years ago
10.1172/jci.insight.138772
IL-32γ potentiates tumor immunity in melanomaCited by: 19
Author(s): Thomas Gruber, Mirela Kremenovic, Hassan Sadozai, Nives Rombini, Lukas Baeriswyl, Fabienne Maibach, Robert L. Modlin, Michel Gilliet, Diego von Werdt, Robert E. Hunger, S. Morteza Seyed Jafari, Giulia Parisi, Gabriel Abril-Rodríguez, Antoni Ribas, Mirjam Schenk
Software Mentions: 5
Published: almost 4 years ago
10.3390/cancers12061431
Characterization of a Myeloid Activation Signature That Correlates with Survival in Melanoma PatientsCited by: 1
Author(s): Mirela Kremenovic, Nives Rombini, Alfred A. Chan, Thomas Gruber, Lukas Bäriswyl, Delphine J. Lee, Mirjam Schenk
Software Mentions: 4
Published: about 4 years ago
10.3389/fmolb.2021.622643
Immune-Inhibitory Gene Expression is Positively Correlated with Overall Immune Activity and Predicts Increased Survival Probability of Cervical and Head and Neck Cancer PatientsCited by: 10
Author(s): Megha Budhwani, Gavin Turrell, Meihua Yu, Ian H. Frazer, Ahmed M. Mehdi, Janin Chandra
Software Mentions: 4
Published: over 3 years ago
10.1002/cti2.1108
CD163<sup>+</sup> tumor‐associated macrophage accumulation in breast cancer patients reflects both local differentiation signals and systemic skewing of monocytesCited by: 39
Author(s): Rodrigo Nalio Ramos, Céline Rodriguez, Margaux Hubert, Maude Ardin, Isabelle Treilleux, Carola H. Ries, Emilie Lavergne, Sylvie Chabaud, Amélie Colombe, Olivier Trédan, Henrique Gomes Guedes, Fábio Martins Laginha, Wilfrid Richer, Eliane Piaggio, José Alexandre Marzagão Barbuto, Christophe Caux, Christine Ménétrier‐Caux, Nathalie Bendriss‐Vermare
Software Mentions: 3
Published: over 4 years ago
10.3390/cancers13051090
Pancreatic Cancers with High Grade Tumor Budding Exhibit Hallmarks of Diminished Anti-Tumor ImmunityCited by: 5
Author(s): Hassan Sadozai, Animesh Acharjee, Thomas Gruber, Beat Gloor, Eva Karamitopoulou
Software Mentions: 2
Published: over 3 years ago