Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13058-021-01451-6
https://doi.org/10.1186/s13058-021-01451-6
Transcriptome and genome evolution during HER2-amplified breast neoplasia
Cited by: 3
Author(s): Peipei Lu, Joseph W. Foley, Chunfang Zhu, Katherine McNamara, Korsuk Sirinukunwattana, Sujay Vennam, Sushama Varma, Hamid Fehri, Arunima Srivastava, Shirley Zhu, Jens Rittscher, Parag Mallick, Christina Curtis, Robert B. West
Published: over 3 years ago
Software Mentions 11
bioconductor: cellscape
Explores single cell copy number profiles in the context of a single cell treePapers that mentioned: 1
bioconductor: copynumber
Segmentation of single- and multi-track copy number data by penalized least squares regression.Papers that mentioned: 13
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: QDNAseq
Quantitative DNA Sequencing for Chromosomal AberrationsPapers that mentioned: 31
pypi: CNVkit
Copy number variation toolkit for high-throughput sequencing.Papers that mentioned: 161