Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: copynumber
https://packages.ecosyste.ms/registries/bioconductor.org/packages/copynumber
Segmentation of single- and multi-track copy number data by penalized least squares regression.
1 version
Latest release: about 1 year ago
1 dependent package
57,017 downloads total
Papers Mentioning copynumber 13
10.3390/cancers13133166
High-Risk Clinicopathological and Genetic Features and Outcomes in Patients Receiving Neoadjuvant Radiochemotherapy for Locally Advanced Rectal CancerCited by: 3
Author(s): Sofía Del Carmen, Luis A. Corchete, Cristina Velasco, Julia Sanz, José A. Sánchez Alcázar, José María Sánchez García, Ana Isabel Enríquez Rodríguez, Rosario Vidal-Tocino, A Barrio Rodriguez, Luis Alberto Pérez-Romasanta, José María Sayagués, Mónica Viñarás Abad
Software Mentions: 16
Published: over 3 years ago
10.1186/s13058-021-01451-6
Transcriptome and genome evolution during HER2-amplified breast neoplasiaCited by: 3
Author(s): Peipei Lu, Joseph W. Foley, Chunfang Zhu, Katherine McNamara, Korsuk Sirinukunwattana, Sujay Vennam, Sushama Varma, Hamid Fehri, Arunima Srivastava, Shirley Zhu, Jens Rittscher, Parag Mallick, Christina Curtis, Robert B. West
Software Mentions: 11
Published: over 3 years ago
10.1371/journal.pcbi.1006596
Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancerCited by: 43
Author(s): Deena M.A. Gendoo, Robert E. Denroche, Amy Zhang, Nikolina Radulovich, Gun Ho Jang, Mathieu Lemire, Sandra E. Fischer, Dianne Chadwick, Ilinca M. Lungu, Emin Ibrahimov, Pinjiang Cao, Lincoln Stein, Julie M. Wilson, John M.S. Bartlett, Ming‐Sound Tsao, Neesha C. Dhani, David W. Hedley, Steven Gallinger, Benjamin Haibe‐Kains
Software Mentions: 9
Published: almost 6 years ago
10.3389/fgene.2019.00888
Genome-Wide Homozygosity Mapping Reveals Genes Associated With Cognitive Ability in Children From Saudi ArabiaCited by: 5
Author(s): Sergey A. Kornilov, Mei Tan, Abdullah Aljughaiman, O. Yu. Naumova, Elena L. Grigorenko
Software Mentions: 5
Published: about 5 years ago
10.1186/1471-2164-13-591
Copynumber: Efficient algorithms for single- and multi-track copy number segmentationCited by: 229
Author(s): Gro Nilsen, Knut Liestøl, Peter Van Loo, Hans Kristian Moen Vollan, Marianne Brodtkorb Eide, Oscar M. Rueda, Suet Feung Chin, Roslin Russell, Lars Oliver Baumbusch, Carlos Caldas, Anne Lise Børresen-Dale, Ole Christian Lingjærde
Software Mentions: 4
Published: about 12 years ago
10.18632/oncotarget.13025
Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapseCited by: 10
Author(s): Patryk Krzemiński, Luis A. Corchete, Juan Luis Garcı́a, Lucía López-Corral, Encarnación Fermiñán, Ernesto Garcı́a, Ana A. Martín, Jesús M. Hernández-Rivas, Ramón García‐Sanz, Jesús F. San Miguel, Norma C. Gutiérrez
Software Mentions: 4
Published: about 8 years ago
10.1002/cam4.1905
Construction of immune-related risk signature for renal papillary cell carcinomaCited by: 42
Author(s): Zhongyu Wang, Qian Song, Zaixing Yang, Jianing Chen, Jun Shang, Wen Ju
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pgen.1006225
Intra-patient Inter-metastatic Genetic Heterogeneity in Colorectal Cancer as a Key Determinant of Survival after Curative Liver ResectionCited by: 55
Author(s): Anita Sveen, Inger Marie Løes, Sharmini Alagaratnam, Gro Nilsen, Maren Høland, Ole Christian Lingjærde, Halfdan Sørbye, Kaja Christine Graue Berg, Arild Horn, Jon Helge Angelsen, Stian Knappskog, Per Eystein Lønning, Ragnhild Lothe
Software Mentions: 2
Published: over 8 years ago
10.3390/cancers12061603
A Novel JAK1 Mutant Breast Implant-Associated Anaplastic Large Cell Lymphoma Patient-Derived Xenograft Fostering Pre-Clinical DiscoveriesCited by: 11
Author(s): Danilo Fiore, Luca Vincenzo Cappelli, Paul Zumbo, Jude M. Phillip, Zhaoqi Liu, Shuhua Cheng, Liron Yoffe, Paola Ghione, Federica Maggio, Ahmet Doğan, Inna Khodos, Elisa de Stanchina, Joseph Casano, Clarisse Kayembe, Wayne Tam, Doron Betel, Robin Foà, Leandro Cerchietti, Raúl Rabadán, Steven M. Horwitz, David M. Weinstock, Giorgio Inghirami
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0116680
An Efficient and Comprehensive Strategy for Genetic Diagnostics of Polycystic Kidney DiseaseCited by: 61
Author(s): Tobias Eisenberger, Christian Decker, Milan Hiersche, Ruben C. Hamann, Eva L. Decker, Steffen Neuber, Valeska Frank, Hanno J. Bolz, Henry Fehrenbach, Lars Pape, Burkhard Toenshoff, Christoph J. Mache, Kay Latta, Carsten Bergmann
Software Mentions: 1
Published: almost 10 years ago
10.1530/ERC-15-0086
Copy number variations alter methylation and parallel IGF2 overexpression in adrenal tumorsCited by: 21
Author(s): Henning Overgaard Nielsen, Alexandre How‐Kit, Carole Guérin, Fréderic Castinetti, Hans Kristian Moen Vollan, C. De Micco, Antoine Daunay, David Taïeb, Peter Van Loo, Céline Besse, Vessela N. Kristensen, Lise Lotte Hansen, Anne Barlier, F. Sébag, Jörg Tost
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0184425
DNA aneuploidy relationship with patient age and tobacco smoke in OPMDs/OSCCsCited by: 13
Author(s): Patrizio Castagnola, S Gandolfo, Davide Malacarne, Cinzia Aiello, Roberto Luiz Marino, Gabriele Zoppoli, Alberto Ballestrero, Walter Giaretti, Monica Pentenero
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-020-75854-4
Recurring urothelial carcinomas show genomic rearrangements incompatible with a direct relationshipCited by: 3
Author(s): Nour Al Dain Marzouka, David Lindgren, Pontus Eriksson, Gottfrid Sjödahl, Carina Bernardo, Fredrik Liedberg, Håkan Axelson, Mattias Höglund
Software Mentions: 1
Published: about 4 years ago