Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1006596

https://doi.org/10.1371/journal.pcbi.1006596

Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancer

Cited by: 43
Author(s): Deena M.A. Gendoo, Robert E. Denroche, Amy Zhang, Nikolina Radulovich, Gun Ho Jang, Mathieu Lemire, Sandra E. Fischer, Dianne Chadwick, Ilinca M. Lungu, Emin Ibrahimov, Pinjiang Cao, Lincoln Stein, Julie M. Wilson, John M.S. Bartlett, Ming‐Sound Tsao, Neesha C. Dhani, David W. Hedley, Steven Gallinger, Benjamin Haibe‐Kains
Published: over 5 years ago

Software Mentions 9

bioconductor: copynumber
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Papers that mentioned: 13
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: GenVisR
Genomic Visualizations in R
Papers that mentioned: 54
bioconductor: PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data
Papers that mentioned: 26
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
cran: RCircos
Circos 2D Track Plot
Papers that mentioned: 74
cran: vcfR
Manipulate and Visualize VCF Data
Papers that mentioned: 62
pypi: PyClone
Wraps rclone and provides an interface for an installation at the host or container level.
Papers that mentioned: 119