Ecosyste.ms: Papers

10.3389/fcell.2020.592490

Transcriptome Sequencing Reveals Potential Roles of ICOS in Primary Sjögren’s Syndrome
Cited by: 19
Author(s): Jing Luo, Xin Liao, Lihe Zhang, Xin Xu, Senhong Ying, Mengjiao Yu, Lixia Zhu, Suxian Lin, Xiaobing Wang
Software Mentions: 14
Published: almost 4 years ago

10.3389/fgene.2021.702072

Characterization of Modification Patterns, Biological Function, Clinical Implication, and Immune Microenvironment Association of m6A Regulators in Pancreatic Cancer
Cited by: 5
Author(s): Kun Fang, Hairong Qu, Jiapei Wang, Desheng Tang, Changsheng Yan, Jiamin Ma, Lei Gao
Software Mentions: 14
Published: about 3 years ago

10.1186/s13073-016-0384-y

XGR software for enhanced interpretation of genomic summary data, illustrated by application to immunological traits
Cited by: 131
Author(s): Hai Fang, Bogdan Knezevic, Katie L Burnham, Julian C. Knight
Software Mentions: 12
Published: almost 8 years ago

10.1186/s12885-021-08442-y

Genetic expression and mutational profile analysis in different pathologic stages of hepatocellular carcinoma patients
Cited by: 9
Author(s): Xingjie Gao, Chunyan Zhao, Nan Zhang, Xiaoteng Cui, Yuanyuan Ren, Chao Su, Shaoyuan Wu, Zhi Yao, Jie Yang
Software Mentions: 12
Published: over 3 years ago

10.3390/ijms221910302

The Impact of m1A Methylation Modification Patterns on Tumor Immune Microenvironment and Prognosis in Oral Squamous Cell Carcinoma
Cited by: 17
Author(s): Li Gao, Ru Chen, Masahiro Sugimoto, Masanobu Mizuta, Yo Kishimoto, Koichi Omori
Software Mentions: 11
Published: about 3 years ago

10.1155/2021/6664386

Hypoxia Molecular Characterization in Hepatocellular Carcinoma Identifies One Risk Signature and Two Nomograms for Clinical Management
Cited by: 23
Author(s): Xinwei Han, Long Liu, Taoyuan Lu, Libo Wang, Zhaonan Li, Dechao Jiao, Xinwei Han
Software Mentions: 11
Published: almost 4 years ago

10.3389/fcell.2021.676485

The Pyroptosis-Related Signature Predicts Prognosis and Indicates Immune Microenvironment Infiltration in Gastric Cancer
Cited by: 116
Author(s): Wei Shao, Zongcheng Yang, Yue Fu, Lixin Zheng, Fen Liu, Li Chai, Jihui Jia
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pcbi.1006596

Whole genomes define concordance of matched primary, xenograft, and organoid models of pancreas cancer
Cited by: 43
Author(s): Deena M.A. Gendoo, Robert E. Denroche, Amy Zhang, Nikolina Radulovich, Gun Ho Jang, Mathieu Lemire, Sandra E. Fischer, Dianne Chadwick, Ilinca M. Lungu, Emin Ibrahimov, Pinjiang Cao, Lincoln Stein, Julie M. Wilson, John M.S. Bartlett, Ming‐Sound Tsao, Neesha C. Dhani, David W. Hedley, Steven Gallinger, Benjamin Haibe‐Kains
Software Mentions: 9
Published: almost 6 years ago

10.1186/s12859-020-3475-0

PACVr: plastome assembly coverage visualization in R
Cited by: 184
Author(s): Michael Gruenstaeudl, Nils Jenke
Software Mentions: 9
Published: over 4 years ago

10.1186/s40169-020-0259-0

Whole‐transcriptome sequencing uncovers core regulatory modules and gene signatures of human fetal growth restriction
Cited by: 13
Author(s): Xing Wang, Jun Yu, Yiwei Yang, Xiaoqin Liu, Xiaobo Zhao, Xudong Guo, Tao Duan, Chenqi Lu
Software Mentions: 8
Published: almost 5 years ago

10.1038/s41598-019-52294-3

Oct4-mediated reprogramming induces embryonic-like microRNA expression signatures in human fibroblasts
Cited by: 16
Author(s): Lucie Pešková, Kateřina Černá, Jan Oppelt, Marek Mráz, Tomáš Bárta
Software Mentions: 7
Published: about 5 years ago

10.18632/aging.103671

Target RNA modification for epigenetic drug repositioning in neuroblastoma: computational omics proximity between repurposing drug and disease
Cited by: 6
Author(s): Pei Ma, Lifeng Yue, Sen Zhang, Da‐Cheng Hao, Zhihong Wu, Lijia Xu, Guanhua Du, Pei‐Gen Xiao
Software Mentions: 7
Published: about 4 years ago

10.3389/fmolb.2020.562441

Novel Molecular Subtypes Associated With 5mC Methylation and Their Role in Hepatocellular Carcinoma Immunotherapy
Cited by: 12
Author(s): Zhuomao Mo, Zhirui Cao, Shaoju Luo, Yan Chen, Shijun Zhang
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0106397

RTCGAToolbox: A New Tool for Exporting TCGA Firehose Data
Cited by: 138
Author(s): Mehmet K. Samur
Software Mentions: 6
Published: about 10 years ago

10.3389/fdata.2021.725095

NPARS—A Novel Approach to Address Accuracy and Reproducibility in Genomic Data Science
Cited by: 2
Author(s): Li Ma, Erich A. Peterson, Ik Jae Shin, Jason Muesse, Katy Marino, Matthew A. Steliga, Donald J. Johann
Software Mentions: 6
Published: about 3 years ago

10.1038/s41438-020-0316-2

Draft genome of the Native American cold hardy grapevine Vitis riparia Michx. ‘Manitoba 37’
Cited by: 16
Author(s): Sagar Patel, Michael Robben, Anne Fennell, Jason P. Londo, Dilmini Alahakoon, Roberto Villegas-Diaz, Padmapriya Swaminathan
Software Mentions: 6
Published: over 4 years ago

10.1186/s13059-014-0483-2

Methylomic profiling of human brain tissue supports a neurodevelopmental origin for schizophrenia
Cited by: 140
Author(s): Ruth Pidsley, Joana Viana, Eilís Hannon, Helen Spiers, Claire Troakes, Safa Al-Saraj, Naguib Mechawar, Gustavo Turecki, Leonard C. Schalkwyk, Nicholas John Bray, Jonathan Mill
Software Mentions: 6
Published: about 10 years ago

10.18632/aging.203190

Immune infiltration and a ferroptosis-associated gene signature for predicting the prognosis of patients with endometrial cancer
Cited by: 32
Author(s): Wenwu Yin, Liao Fuchun, Mengjie Chen, Xiaoqing Qin, Hao Lai, Yuan Lin, Desheng Yao
Software Mentions: 6
Published: over 3 years ago

10.3389/fimmu.2021.722479

Human Mitochondrial Ribosomal RNA Modification-Based Classification Contributes to Discriminate the Prognosis and Immunotherapy Response of Glioma Patients
Cited by: 1
Author(s): Peng Wang, Jingying Li, Minxian Wu, Minghua Ye, Kai Huang, Xiang Yang Zhu
Software Mentions: 6
Published: about 3 years ago

10.18632/aging.103721

Gene expression-based clinical predictions in lung adenocarcinoma
Cited by: 3
Author(s): Yanlu Xiong, Jie Lei, Jinbo Zhao, Yangbo Feng, Tianyun Qiao, Yongsheng Zhou, Tao Jiang, Han Ye
Software Mentions: 5
Published: over 4 years ago

10.1038/s41420-021-00557-2

Identification of the pyroptosis‑related prognostic gene signature and the associated regulation axis in lung adenocarcinoma
Cited by: 119
Author(s): Wanli Lin, Ying Chen, Bomeng Wu, Zuwei Li
Software Mentions: 5
Published: over 3 years ago

10.1534/g3.117.040170

A Chromosome-Scale Assembly of the<i>Bactrocera cucurbitae</i>Genome Provides Insight to the Genetic Basis of<i>white pupae</i>
Cited by: 30
Author(s): Sheina B. Sim, Scott M. Geib
Software Mentions: 5
Published: over 7 years ago

10.1186/s12885-021-08635-5

Clinical application of whole transcriptome sequencing for the classification of patients with acute lymphoblastic leukemia
Cited by: 12
Author(s): Wencke Walter, Rabia Shahswar, Anna Stengel, Manja Meggendorfer, Wolfgang Kern, Torsten Haferlach, Claudia Haferlach
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2020.579709

Potential of Immune-Related Genes as Biomarkers for Diagnosis and Subtype Classification of Preeclampsia
Cited by: 8
Author(s): Ying Wang, Zhen Li, Guanhua Song, Jun Wang
Software Mentions: 5
Published: almost 4 years ago

10.7554/eLife.58659

A human ESC-based screen identifies a role for the translated lncRNA LINC00261 in pancreatic endocrine differentiation
Cited by: 22
Author(s): Bjoern Gaertner, Sebastiaan van Heesch, Valentin Schneider-Lunitz, Jana Felicitas Schulz, Franziska Witte, Susanne Blachut, Steven Nguyen, Richard L. Wong, Ileana Matta, Norbert Hübner
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2164-15-1103

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
Cited by: 75
Author(s): Romain Blanc-Mathieu, Bram Verhelst, Évelyne Derelle, Stéphane Rombauts, François‐Yves Bouget, Isabelle A. Carré, Annie Château, Adam Eyre‐Walker, Nigel Grimsley, Hervé Moreau, Benoît Piégu, Éric Rivals, Wendy Schackwitz, Yves Van de Peer, Gwenaël Piganeau
Software Mentions: 5
Published: almost 10 years ago

10.3390/cancers13123014

Upper Aerodigestive Tract Squamous Cell Carcinomas Show Distinct Overall DNA Methylation Profiles and Different Molecular Mechanisms behind WNT Signaling Disruption
Cited by: 6
Author(s): Sheila Coelho Soares-Lima, Hisham Mehanna, Diego Camuzi, Paulo Thiago de Souza-Santos, Tatiana de Almeida Simão, Pedro Nicolau-Neto, Monique de Souza Almeida Lopes, Cyrille Cuenin, Fazlur Rahman Talukdar, Nikolaos Batis, Izabella Costa, Fernando Luiz Dias, Davide Degli Esposti, Mariana Boroni, Zdenko Herceg, Luís Felipe Ribeiro Pinto
Software Mentions: 5
Published: over 3 years ago

10.1186/s13073-021-00879-x

Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers
Cited by: 7
Author(s): Xiaotong Li, Sushant Kumar, Arif Harmanci, Shantao Li, Robert Kitchen, Yan Zhang, Vikram B. Wali, Sangeetha M. Reddy, Wendy A. Woodward, James M. Reuben, Joel Rozowsky, Christos Hatzis, Naoto T. Ueno, Savitri Krishnamurthy, Lajos Pusztai, Mark Gerstein
Software Mentions: 5
Published: over 3 years ago

10.1155/2020/7503605

Integrated Analyses Identify Immune-Related Signature Associated with Qingyihuaji Formula for Treatment of Pancreatic Ductal Adenocarcinoma Using Network Pharmacology and Weighted Gene Co-Expression Network
Cited by: 9
Author(s): Xiang Qian, Zhuo Chen, Sha Sha Chen, Lu Ming Liu, Ai Qin Zhang
Software Mentions: 5
Published: over 4 years ago

10.3389/fmolb.2021.703307

A Potential circRNA-miRNA-mRNA Regulatory Network in Asthmatic Airway Epithelial Cells Identified by Integrated Analysis of Microarray Datasets
Cited by: 7
Author(s): Dian Chen, Wenliang Wu, Lingling Yi, Yuchen Feng, Chenli Chang, Shengchong Chen, Jiali Gao, Gongqi Chen, Guohua Zhen
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2105-14-244

RCircos: an R package for Circos 2D track plots
Cited by: 425
Author(s): Hongen Zhang, Paul S. Meltzer, Sean Davis
Software Mentions: 4
Published: over 11 years ago

10.1186/1471-2105-15-198

CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data
Cited by: 35
Author(s): Delphine Naquin, Yves d’Aubenton-Carafa, Claude Thermes, Maud Silvain
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2407-14-977

Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer
Cited by: 41
Author(s): Prabhakar Rajan, Jacqueline Stockley, Ian Sudbery, Janis Fleming, Ann Hedley, Gabriela Kalna, David Sims, Chris P. Ponting, Andreas Heger, Craig Robson, R. McMenemin, Ian Pedley, Hing Y. Leung
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12885-019-5501-z

Elucidating the transcriptional program of feline injection-site sarcoma using a cross-species mRNA-sequencing approach
Cited by: 7
Author(s): Qi Wei, Stephen A. Ramsey, Maureen K. Larson, Noah Berlow, Donasian O. Ochola, Christopher Shiprack, Amita Kashyap, Bernard Séguin, Charles Keller, Christiane V. Löhr
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2164-14-918

POMO - Plotting Omics analysis results for Multiple Organisms
Cited by: 3
Author(s): Jake Lin, Richard Kreisberg, Aleksi Kallio, Andrew T. Dudley, Matti Nykter, Ilya Shmulevich, Patrick May, Reija Autio
Software Mentions: 4
Published: almost 12 years ago

10.3389/fgene.2021.634162

Significance of RNA N6-Methyladenosine Regulators in the Diagnosis and Subtype Classification of Childhood Asthma Using the Gene Expression Omnibus Database
Cited by: 32
Author(s): Bing Dai, Feifei Sun, Xuxu Cai, Chunlu Li, Henan Liu, Yunxiao Shang
Software Mentions: 4
Published: over 3 years ago

10.3390/genes10070554

Chromatin Interaction Analysis with Updated ChIA-PET Tool (V3)
Cited by: 17
Author(s): Guoliang Li, Tongkai Sun, Huidan Chang, Liuyang Cai, Hong Pan, Qiangwei Zhou
Software Mentions: 4
Published: over 5 years ago

10.1186/s12931-016-0496-3

Whole Transcriptome Analysis of Pre-invasive and Invasive Early Squamous Lung Carcinoma in Archival Laser Microdissected Samples
Cited by: 5
Author(s): Andre Koper, Leo Zeef, Leena Dennis Joseph, Keith M. Kerr, John R. Gosney, Mark A. Lindsay, Richard Booton
Software Mentions: 4
Published: almost 8 years ago

10.1186/s12864-018-4698-6

Familial resemblances in human whole blood transcriptome
Cited by: 5
Author(s): Bénédicte L. Tremblay, Frédéric Guénard, Benoı̂t Lamarche, Louis Pérusse, Marie‐Claude Vohl
Software Mentions: 3
Published: over 6 years ago

10.18632/aging.102612

ASPM promotes glioblastoma growth by regulating G1 restriction point progression and Wnt-β-catenin signaling
Cited by: 29
Author(s): Xin Chen, Lijie Huang, Yang Yang, Suhua Chen, Jianjun Sun, Chang-cheng Ma, Jingcheng Xie, Yongmei Song, Jun Yang
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0172521

Chronically dysregulated NOTCH1 interactome in the dentate gyrus after traumatic brain injury
Cited by: 16
Author(s): Noora Puhakka, Anna Bot, Niina Vuokila, Konrad J. Dębski, Katarzyna Łukasiuk, Asla Pitkänen
Software Mentions: 3
Published: over 7 years ago

10.1186/s13059-014-0472-5

Dynamic evolution of clonal epialleles revealed by methclone
Cited by: 60
Author(s): Sheng Li, Francine E. Garrett-Bakelman, Alexander E. Perl, Selina M. Luger, Chao Zhang, Bik To, Ian D. Lewis, Anna L. Brown, Richard J. D’Andrea, M. Elizabeth Ross, Ross L. Levine, Martin Carroll, Ari Melnick, Christopher E. Mason
Software Mentions: 3
Published: about 10 years ago

10.1186/s12859-017-1575-2

ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface
Cited by: 16
Author(s): Anke Fähnrich, Moritz Krebbel, Normann Decker, Martin Leucker, Felix D. Lange, Kathrin Kalies, Steffen Möller
Software Mentions: 3
Published: over 7 years ago

10.3390/genes11091027

A Highly Polymorphic Panel Consisting of Microhaplotypes and Compound Markers with the NGS and Its Forensic Efficiency Evaluations in Chinese Two Groups
Cited by: 8
Author(s): Xiaoye Jin, Xingru Zhang, Chunmei Shen, Yanfang Liu, Wei Cui, Chong Chen, Yuxin Guo, Bofeng Zhu
Software Mentions: 3
Published: about 4 years ago

10.3389/fcimb.2020.00250

Combined Analysis of DNA Methylome and Transcriptome Reveal Novel Candidate Genes Related to Porcine Escherichia coli F4ab/ac-Induced Diarrhea
Cited by: 7
Author(s): Wenwen Wang, Chuanli Zhou, Hui Tang, Ying Yu, Qin Zhang
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-37835-6

Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations
Cited by: 20
Author(s): Sajal Dash, Nicholas A. Kinney, Robin Varghese, Harold R. Garner, Wu-chun Feng, Ramu Anandakrishnan
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41419-017-0232-z

Circular RNA GRB10 as a competitive endogenous RNA regulating nucleus pulposus cells death in degenerative intervertebral disk
Cited by: 47
Author(s): Wei Guo, Bin Zhang, Kun Mu, Shiqing Feng, Zhan‐Yin Dong, Guangzhi Ning, Haoran Li, Shen Liu, Ling Zhao, Yan Li, Bingbing Yu, Huiquan Duan, Chao Sun, Yongjin Li
Software Mentions: 2
Published: over 6 years ago

10.3389/fendo.2019.00821

TMT Based Proteomic Analysis of Human Follicular Fluid From Overweight/Obese and Normal-Weight Patients With Polycystic Ovary Syndrome
Cited by: 23
Author(s): Xinyi Zhang, Xiaoyan Xu, Pingping Li, Feifei Zhou, Lin Kong, Jiahui Qiu, Zhengwei Yuan, Jichun Tan
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pgen.1006385

The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts
Cited by: 80
Author(s): Natalie Saini, Steven A. Roberts, Leszek J. Klimczak, Kin Chan, Sara A. Grimm, Shuang-Shuang Dai, David C. Fargo, Jayne C. Boyer, William K. Kaufmann, Jack A. Taylor, Eunjung Lee, Isidro Cortés-Ciriano, Peter J. Park, Shepherd H. Schurman, Ewa Malc, Piotr A. Mieczkowski, Dmitry A. Gordenin
Software Mentions: 2
Published: about 8 years ago

10.1534/g3.116.029504

Whole-Genome Sequencing Reveals Genetic Variation in the Asian House Rat
Cited by: 8
Author(s): Huajing Teng, Yaohua Zhang, Cheng-Min Shi, Fengbiao Mao, Lingling Hou, Hongling Guo, Zhen Sun, Jianxu Zhang
Software Mentions: 2
Published: over 8 years ago

10.1093/bioinformatics/btv433

ClicO FS: an interactive web-based service of Circos
Cited by: 78
Author(s): Wei-Hien Cheong, Yung-Chie Tan, Soon-Joo Yap, Kee-Peng Ng
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.14098

Cervical small cell neuroendocrine tumor mutation profiles via whole exome sequencing
Cited by: 24
Author(s): Soo Young Cho, Minhye Choi, Hyo Jeong Ban, Chang Hyeon Lee, Soojun Park, Han Kyeom Kim, Young Sik Kim, Young Seek Lee, Ji Yun Lee
Software Mentions: 2
Published: almost 8 years ago

10.1002/path.5699

The early evolutionary landscape of osteosarcoma provides clues for targeted treatment strategies
Cited by: 8
Author(s): Michal Kováč, Baptiste Ameline, Sebastian Ribi, Monika Kováčová, William Cross, Maxim Barenboim, Olaf Witt, Stefan Bielack, Andreas H. Krieg, Wolfgang Hartmann, Michaela Nathrath, Daniel Baumhoer
Software Mentions: 2
Published: over 3 years ago

10.1038/srep18227

MycoCAP - Mycobacterium Comparative Analysis Platform
Cited by: 4
Author(s): Siew Woh Choo, Mia Yang Ang, Avirup Dutta, Shi Tan, Cheuk Chuen Siow, Hamed Heydari, Naresh V.R. Mutha, Wei Yee Wee, George T.F. Wong
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-019-51951-x

Whole mitochondrial genome sequencing highlights mitochondrial impact in gastric cancer
Cited by: 13
Author(s): Giovanna C. Cavalcante, Andrey Moacir do Rosário Marinho, Ana Karyssa Mendes Anaissi, Tatiana Vinasco-Sandoval, Ândrea Ribeiro-dos-Santos, Amanda Ferreira Vidal, Gilderlanio Santana de Araújo, Sâmia Demachki
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-58785-y

Identifying multi-hit carcinogenic gene combinations: Scaling up a weighted set cover algorithm using compressed binary matrix representation on a GPU
Cited by: 9
Author(s): Qais Al hajri, Sajal Dash, Wu-chun Feng, Harold R. Garner, Ramu Anandakrishnan
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-72096-2

Integrative genomic analysis of salivary duct carcinoma
Cited by: 10
Author(s): Youngwook Kim, Sanghoon Song, Miran Lee, Teresa Swatloski, Joon Ho Kang, Young‐Hyeh Ko, Woong-Yang Park, Han‐Sin Jeong, Keunchil Park
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms22073529

Genome-wide Identification and Characterization of FCS-Like Zinc Finger (FLZ) Family Genes in Maize (Zea mays) and Functional Analysis of ZmFLZ25 in Plant Abscisic Acid Response
Cited by: 13
Author(s): Shunquan Chen, Xibao Li, Chao Yang, Yan Wang, Chuanliang Liu, Xiaoyan Tang, Caiji Gao
Software Mentions: 2
Published: over 3 years ago

10.1093/database/bau082

FusoBase: an online Fusobacterium comparative genomic analysis platform
Cited by: 4
Author(s): Mia Yang Ang, Hamed Heydari, Nicholas S. Jakubovics, Mahafizul Imran Mahmud, Avirup Dutta, Wei Yee Wee, George T.F. Wong, Naresh V.R. Mutha, Shi Tan, Siew Woh Choo
Software Mentions: 2
Published: over 10 years ago

10.1016/j.dib.2018.11.123

Dataset for interpreting the Circos figures used in the review of friction stir welding of titanium alloys
Cited by: 0
Author(s): Kapil Gangwar, M. Ramulu
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0162801

ePGA: A Web-Based Information System for Translational Pharmacogenomics
Cited by: 12
Author(s): Kleanthi Lakiotaki, Evgenia Kartsaki, Alexandros Kanterakis, Θεοδώρα Κάτσιλα, George P. Patrinos, George Potamias
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-018-4487-2

Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history
Cited by: 30
Author(s): Agnieszka Klonowska, Rémy Melkonian, Lucie Miché, Pierre Tisseyre, Lionel Moulin
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-15-600

HelicoBase: a Helicobacter genomic resource and analysis platform
Cited by: 6
Author(s): Siew Woh Choo, Mia Yang Ang, Hanieh Fouladi, Shi Tan, Cheuk Chuen Siow, Naresh V.R. Mutha, Hamed Heydari, Wei Yee Wee, Jamuna Vadivelu, Mun Fai Loke, Vellaya Rehvathy, George T.F. Wong
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12864-020-6619-8

Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication
Cited by: 5
Author(s): Zeinab Amiri Ghanatsaman, Guodong Wang, Hojjat Asadollahpour Nanaei, Masood Asadi Fozi, Min‐Sheng Peng, Ali Esmailizadeh, Yaping Zhang
Software Mentions: 2
Published: over 4 years ago

10.1534/g3.117.040741

Whole Genome Sequencing of the Braconid Parasitoid Wasp <i>Fopius arisanus</i>, an Important Biocontrol Agent of Pest Tepritid Fruit Flies
Cited by: 30
Author(s): Scott M. Geib, Guanghong Liang, Terence Murphy, Sheina B. Sim
Software Mentions: 1
Published: over 7 years ago

10.1186/s13293-014-0016-4

Effects of sex chromosome dosage on corpus callosum morphology in supernumerary sex chromosome aneuploidies
Cited by: 9
Author(s): Benjamin Wade, S. K. Joshi, Martin Reuter, Jonathan D. Blumenthal, Arthur W. Toga, Paul M. Thompson, Jay N. Giedd
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0129069

Application of an Effective Statistical Technique for an Accurate and Powerful Mining of Quantitative Trait Loci for Rice Aroma Trait
Cited by: 3
Author(s): Farahnaz Sadat Golestan Hashemi, Mohd Y. Rafii, Mohd Razi Ismail, Mahmud Tengku Muda Mohamed, Abdul Rahim Harun, Abdul Latif, Farzad Aslani
Software Mentions: 1
Published: over 9 years ago

10.3390/ijms18051020

Characterization of Copy Number Variation’s Potential Role in Marek’s Disease
Cited by: 8
Author(s): Lingyang Xu, Yanghua He, Yi Ding, Guirong Sun, José A. Carrillo, Yaokun Li, Mona M. Ghaly, Li Ma, Huanmin Zhang, George E. Liu, Jiuzhou Song
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-020-3477-y

TarPan: an easily adaptable targeted sequencing panel viewer for research and clinical use
Cited by: 2
Author(s): Cody Ashby, Michael Rutherford, Michael Bauer, Erich A. Peterson, Yan Wang, Eileen M. Boyle, Christopher P. Wardell, Brian A Walker
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-92223-x

SMARCB1 deletion in atypical teratoid rhabdoid tumors results in human endogenous retrovirus K (HML-2) expression
Cited by: 13
Author(s): Tara T. Doucet-O’Hare, Brianna DiSanza, Catherine DeMarino, Abigail L. Atkinson, Jared S. Rosenblum, Lee A. Henderson, Kory R. Johnson, Jeffrey A. Kowalak, Marta García-Montojo, Sariah J. Allen, Brent A. Orr, Mariarita Santi, Tongguang Wang, Saeed Fathi, Myoung Hwa Lee, Kevon Sampson, Wenxue Li, Zhengping Zhuang, Avindra Nath
Software Mentions: 1
Published: over 3 years ago

10.1186/s12863-020-00884-w

Genome-wide characterization of copy number variations in the host genome in genetic resistance to Marek’s disease using next generation sequencing
Cited by: 2
Author(s): Hao Bai, Yanghua He, Yi Ding, Qing Chu, Ling Lian, Eliyahu M Heifetz, Ning Yang, Hans H. Cheng, Huanmin Zhang, Jilan Chen, Jiuzhou Song
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.1698

NeisseriaBase: a specialised<i>Neisseria</i>genomic resource and analysis platform
Cited by: 3
Author(s): Wenning Zheng, Naresh V.R. Mutha, Hamed Heydari, Avirup Dutta, Cheuk Chuen Siow, Nicholas S. Jakubovics, Wei Yee Wee, Shi Tan, Mia Yang Ang, George T.F. Wong, Siew Woh Choo
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-018-5288-3

Consensus map integration and QTL meta-analysis narrowed a locus for yield traits to 0.7 cM and refined a region for late leaf spot resistance traits to 0.38 cM on linkage group A05 in peanut (Arachis hypogaea L.)
Cited by: 22
Author(s): Qing Lu, Hao Líu, Yanbin Hong, Haifen Li, Xingyu Li, Shaoqing Wen, Zhou Guiyuan, Shaoxiong Li, Xiaoping Chen, Xuanqiang Liang
Software Mentions: 1
Published: almost 6 years ago