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Papers: 10.1186/s12859-020-3475-0

https://doi.org/10.1186/s12859-020-3475-0

PACVr: plastome assembly coverage visualization in R

Cited by: 184
Author(s): Michael Gruenstaeudl, Nils Jenke
Published: about 5 years ago

Software Mentions 9

bioconductor: BiocGenerics
S4 generic functions used in Bioconductor
Papers that mentioned: 15
Very Likely Science (75)
bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
Very Likely Science (65)
bioconductor: genbankr
Parsing GenBank files into semantically useful objects
Papers that mentioned: 2
Very Likely Science (75)
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
Very Likely Science (90)
cran: optparse
Command Line Option Parser
Papers that mentioned: 15
Very Likely Science (100)
cran: PACVr
Plastome Assembly Coverage Visualization
Papers that mentioned: 1
Very Likely Science (85)
cran: RCircos
Circos 2D Track Plot
Papers that mentioned: 74
Very Likely Science (75)
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
Very Likely Science (100)
pypi: ORG.asm
A de novo assembler dedicated to organelle genome assembling
Papers that mentioned: 1
Very Likely Science (80)