Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: BiocGenerics
https://packages.ecosyste.ms/registries/bioconductor.org/packages/BiocGenerics
S4 generic functions used in Bioconductor
1 version
Latest release: 12 months ago
683 dependent packages
7,118,573 downloads total
Papers Mentioning BiocGenerics 15
10.1186/1471-2156-15-81
Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrationsCited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: almost 11 years ago
10.12688/f1000research.17824.2
Enhancing gene set enrichment using networksCited by: 2
Author(s): Michael Prummer
Software Mentions: 51
Published: about 5 years ago
10.12688/f1000research.22259.1
Fluent genomics with plyranges and tximetaCited by: 2
Author(s): Stuart Lee, Michael C. Lawrence, Michael I. Love
Software Mentions: 35
Published: over 4 years ago
10.12688/f1000research.9973.2
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment testsCited by: 20
Author(s): Andrea Komljenović, Julien Roux, Julien Wollbrett, Marc Robinson‐Rechavi, Frederic Bastian
Software Mentions: 33
Published: about 6 years ago
10.3390/microorganisms9051094
Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug ResistanceCited by: 16
Author(s): Alfredo Mari, Tim Roloff, Madlen Stange, Kirstine Kobberøe Søgaard, Erblin Asllanaj, Gerardo Tauriello, Leila T. Alexander, Michael Schweitzer, Karoline Leuzinger, Alexander Gensch, Aurélien Emmanuel Martinez, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H. Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Parham Sendi, Manuel Battegay, Catia Marzolini, Helena M. B. Seth-Smith, Torsten Schwede, Hans H. Hirsch, Adrian Egli
Software Mentions: 27
Published: over 3 years ago
10.3389/fimmu.2021.701085
A Single-Cell Atlas of Lymphocyte Adaptive Immune Repertoires and Transcriptomes Reveals Age-Related Differences in Convalescent COVID-19 PatientsCited by: 29
Author(s): Florian Bieberich, Rodrigo Vazquez-Lombardi, Alexander Yermanos, Roy Ehling, Derek M Mason, Bastian Wagner, Edo Kapetanovic, Raphaël Brisset Di Roberto, Cédric R. Weber, Miodrag Savic, Fabian Rudolf, Sai T. Reddy
Software Mentions: 23
Published: about 3 years ago
10.1016/j.patter.2021.100322
The role of metadata in reproducible computational researchCited by: 38
Author(s): Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Karthik Ram, Jane Greenberg
Software Mentions: 21
Published: about 3 years ago
10.1186/s12859-015-0683-0
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C dataCited by: 172
Author(s): Aaron T. L. Lun, Gordon K. Smyth
Software Mentions: 14
Published: about 9 years ago
10.1093/bioinformatics/btw777
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in RCited by: 1,059
Author(s): Davis J. McCarthy, Kieran R Campbell, Aaron T. L. Lun, Quin F. Wills
Software Mentions: 14
Published: over 7 years ago
10.3390/cancers13174348
Histological Grade of Endometrioid Endometrial Cancer and Relapse Risk Can Be Predicted with Machine Learning from Gene Expression DataCited by: 4
Author(s): Péter Gargya, Bálint László Bálint
Software Mentions: 14
Published: about 3 years ago
10.3389/fendo.2020.554922
Chenodeoxycholic Acid Modulates Bile Acid Synthesis Independent of Fibroblast Growth Factor 19 in Primary Human HepatocytesCited by: 6
Author(s): H Johansson, Jonas Nørskov Søndergaard, Carl Jorns, Claudia Kutter, Ewa Ellis
Software Mentions: 9
Published: over 3 years ago
10.1186/s12859-020-3475-0
PACVr: plastome assembly coverage visualization in RCited by: 184
Author(s): Michael Gruenstaeudl, Nils Jenke
Software Mentions: 9
Published: over 4 years ago
10.1186/s12864-020-06977-1
Integrating binding and expression data to predict transcription factors combined functionCited by: 9
Author(s): Mahmoud Ahmed, Do Sik Min, Deok Ryong Kim
Software Mentions: 8
Published: about 4 years ago
10.15252/embr.201846401
Inherent <scp>DNA</scp> ‐binding specificities of the <scp>HIF</scp> ‐1α and <scp>HIF</scp> ‐2α transcription factors in chromatinCited by: 128
Author(s): James Smythies, Min Sun, Norma Masson, Rafik Salama, Peter Simpson, Elizabeth R. Murray, Viviana K. Neumann, Matthew E. Cockman, Hani Choudhry, Peter J. Ratcliffe, David R. Mole
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pgen.1006348
Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus SuillusCited by: 50
Author(s): Hui‐Ling Liao, Yuan Chen, Rytas Vilgalys
Software Mentions: 2
Published: almost 8 years ago