Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-020-06977-1

https://doi.org/10.1186/s12864-020-06977-1

Integrating binding and expression data to predict transcription factors combined function

Cited by: 9
Author(s): Mahmoud Ahmed, Do Sik Min, Deok Ryong Kim
Published: over 4 years ago

Software Mentions 8

bioconductor: BiocGenerics
S4 generic functions used in Bioconductor
Papers that mentioned: 15
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
bioconductor: rTRM
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
Papers that mentioned: 4
bioconductor: TFEA.ChIP
Analyze Transcription Factor Enrichment
Papers that mentioned: 8
bioconductor: transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
Papers that mentioned: 1
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Papers that mentioned: 46
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203