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Papers: 10.1186/s12864-020-06977-1

https://doi.org/10.1186/s12864-020-06977-1

Integrating binding and expression data to predict transcription factors combined function

Cited by: 9
Author(s): Mahmoud Ahmed, Do Sik Min, Deok Ryong Kim
Published: almost 5 years ago

Software Mentions 8

bioconductor: BiocGenerics
S4 generic functions used in Bioconductor
Papers that mentioned: 15
Very Likely Science (75)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
Very Likely Science (75)
bioconductor: rTRM
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
Papers that mentioned: 4
Very Likely Science (100)
bioconductor: TFEA.ChIP
Analyze Transcription Factor Enrichment
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
Papers that mentioned: 1
Very Likely Science (90)
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Papers that mentioned: 46
Very Likely Science (75)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)