Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fimmu.2021.701085

https://doi.org/10.3389/fimmu.2021.701085

Cited by: 29
Author(s): Florian Bieberich, Rodrigo Vazquez-Lombardi, Alexander Yermanos, Roy Ehling, Derek M Mason, Bastian Wagner, Edo Kapetanovic, Raphaël Brisset Di Roberto, Cédric R. Weber, Miodrag Savic, Fabian Rudolf, Sai T. Reddy
Published: almost 3 years ago

Software Mentions 23

bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: BiocGenerics
S4 generic functions used in Bioconductor
Papers that mentioned: 15
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
bioconductor: DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
Papers that mentioned: 6
bioconductor: GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Papers that mentioned: 7
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: slingshot
Tools for ordering single-cell sequencing
Papers that mentioned: 8
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: harmony
Fast, Sensitive, and Accurate Integration of Single Cell Data
Papers that mentioned: 6
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
Papers that mentioned: 46
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: princurve
Fit a Principal Curve in Arbitrary Dimension
Papers that mentioned: 3
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: stringdist
Approximate String Matching, Fuzzy Text Search, and String Distance Functions
Papers that mentioned: 18
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: slingshot
Index Migration for ElasticSearch
Papers that mentioned: 8