Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: slingshot
https://packages.ecosyste.ms/registries/bioconductor.org/packages/slingshot
Tools for ordering single-cell sequencing
1 version
Latest release: about 1 year ago
4 dependent packages
72,962 downloads total
Papers Mentioning slingshot 8
10.3389/fimmu.2021.701085
A Single-Cell Atlas of Lymphocyte Adaptive Immune Repertoires and Transcriptomes Reveals Age-Related Differences in Convalescent COVID-19 PatientsCited by: 29
Author(s): Florian Bieberich, Rodrigo Vazquez-Lombardi, Alexander Yermanos, Roy Ehling, Derek M Mason, Bastian Wagner, Edo Kapetanovic, Raphaël Brisset Di Roberto, Cédric R. Weber, Miodrag Savic, Fabian Rudolf, Sai T. Reddy
Software Mentions: 23
Published: over 3 years ago
10.1016/j.stem.2019.07.008
Defining the Identity and Dynamics of Adult Gastric Isthmus Stem CellsCited by: 85
Author(s): Seungmin Han, J. Lynn Fink, David J. Jörg, Eunmin Lee, Min Kyu Yum, Lemonia Chatzeli, Sebastian R. Merker, Manon Josserand, Teodora Trendafilova, Amanda Andersson-Rolf, Catherine Dabrowska, Hyunki Kim, Ronald Naumann, Ji–Hyun Lee, Nobuo Sasaki, Richard L. Mort, Onur Basak, Hans Clevers, Daniel E. Stange, Anna Philpott, Jong Kim, Benjamin D. Simons, Bon‐Kyoung Koo
Software Mentions: 17
Published: over 5 years ago
10.1038/s42003-020-01625-6
Mapping the immune environment in clear cell renal carcinoma by single-cell genomicsCited by: 103
Author(s): Nicholas Borcherding, Ajaykumar Vishwakarma, Andrew P. Voigt, Andrew M. Bellizzi, Jacob Kaplan, Kenneth G. Nepple, Aliasger K. Salem, Russell W. Jenkins, Yousef Zakharia, Weizhou Zhang
Software Mentions: 14
Published: almost 4 years ago
10.12688/f1000research.12122.1
Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inferenceCited by: 14
Author(s): Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Software Mentions: 12
Published: over 7 years ago
10.1016/j.isci.2021.102882
Integrated analysis of glycan and RNA in single cellsCited by: 22
Author(s): Fumi Minoshima, Haruka Ozaki, Haruki Odaka, Hiroaki Tateno
Software Mentions: 11
Published: over 3 years ago
10.7554/eLife.60223
Analysis of the immune response to sciatic nerve injury identifies efferocytosis as a key mechanism of nerve debridementCited by: 64
Author(s): Ashley L. Kalinski, Choya Yoon, Lucas D. Huffman, Patrick C. Duncker, Rafi Kohen, Ryan Passino, Hannah Hafner, Craig Johnson, Riki Kawaguchi, Kevin S. Carbajal, Juan Sebastián Jara, Edmund R. Hollis, Daniel H. Geschwind, Benjamin M. Segal, Roman J. Giger
Software Mentions: 7
Published: about 4 years ago
10.1172/jci.insight.143626
Molecular mapping of interstitial lung disease reveals a phenotypically distinct senescent basal epithelial cell populationCited by: 34
Author(s): Daryle J. DePianto, Jason A. Vander Heiden, Katrina B. Morshead, Kan Sun, Zora Modrušan, Grace Teng, Paul J. Wolters, Joseph R. Arron
Software Mentions: 5
Published: over 3 years ago
10.3390/genes12050635
Investigating Cellular Trajectories in the Severity of COVID-19 and Their Transcriptional Programs Using Machine Learning ApproachesCited by: 13
Author(s): Hyun-Hwan Jeong, Johnathan Jia, Yulin Dai, Lukas M. Simon, Zhongming Zhao
Software Mentions: 3
Published: over 3 years ago