Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.stem.2019.07.008

https://doi.org/10.1016/j.stem.2019.07.008

Cited by: 85
Author(s): Seungmin Han, J. Lynn Fink, David J. Jörg, Eunmin Lee, Min Kyu Yum, Lemonia Chatzeli, Sebastian R. Merker, Manon Josserand, Teodora Trendafilova, Amanda Andersson-Rolf, Catherine Dabrowska, Hyunki Kim, Ronald Naumann, Ji–Hyun Lee, Nobuo Sasaki, Richard L. Mort, Onur Basak, Hans Clevers, Daniel E. Stange, Anna Philpott, Jong Kim, Benjamin D. Simons, Bon‐Kyoung Koo
Published: over 4 years ago

Software Mentions 17

bioconductor: destiny
Creates diffusion maps
Papers that mentioned: 18
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Papers that mentioned: 60
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
bioconductor: slingshot
Tools for ordering single-cell sequencing
Papers that mentioned: 8
cran: amap
Another Multidimensional Analysis Package
Papers that mentioned: 37
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: umap
Uniform Manifold Approximation and Projection
Papers that mentioned: 24
pypi: amap
Automated mouse atlas propagation
Papers that mentioned: 37
pypi: AutoQuant
Auto Quant
Papers that mentioned: 118
pypi: destiny

Papers that mentioned: 18
pypi: monocle
An async programming framework with a blocking look-alike syntax
Papers that mentioned: 60
pypi: slingshot
Index Migration for ElasticSearch
Papers that mentioned: 8
pypi: umap
UNIST synthesis MAP solution
Papers that mentioned: 24