Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: destiny
https://packages.ecosyste.ms/registries/bioconductor.org/packages/destiny
Creates diffusion maps
1 version
Latest release: 10 months ago
4 dependent packages
118,437 downloads total
Papers Mentioning destiny 18
10.1016/j.stem.2019.07.008
Defining the Identity and Dynamics of Adult Gastric Isthmus Stem CellsCited by: 85
Author(s): Seungmin Han, J. Lynn Fink, David J. Jörg, Eunmin Lee, Min Kyu Yum, Lemonia Chatzeli, Sebastian R. Merker, Manon Josserand, Teodora Trendafilova, Amanda Andersson-Rolf, Catherine Dabrowska, Hyunki Kim, Ronald Naumann, Ji–Hyun Lee, Nobuo Sasaki, Richard L. Mort, Onur Basak, Hans Clevers, Daniel E. Stange, Anna Philpott, Jong Kim, Benjamin D. Simons, Bon‐Kyoung Koo
Software Mentions: 17
Published: almost 5 years ago
10.1093/bioinformatics/btw777
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in RCited by: 1,059
Author(s): Davis J. McCarthy, Kieran R Campbell, Aaron T. L. Lun, Quin F. Wills
Software Mentions: 14
Published: over 7 years ago
10.1038/s42003-019-0554-8
Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcomeCited by: 37
Author(s): Weiyan Chen, Samuel Morabito, Kai Kessenbrock, Tariq Enver, Kerstin B. Meyer, Andrew E. Teschendorff
Software Mentions: 14
Published: almost 5 years ago
10.1016/j.isci.2021.102882
Integrated analysis of glycan and RNA in single cellsCited by: 22
Author(s): Fumi Minoshima, Haruka Ozaki, Haruki Odaka, Hiroaki Tateno
Software Mentions: 11
Published: almost 3 years ago
10.1038/s41421-021-00314-w
Single-cell RNA-Seq reveals transcriptional heterogeneity and immune subtypes associated with disease activity in human myasthenia gravisCited by: 12
Author(s): Jin Wu, Qi Yang, Yuyao Peng, Chengkai Yan, Yi Li, Zhaohui Luo, Bo Xiao, Liqun Xu, Huan Yang
Software Mentions: 11
Published: almost 3 years ago
10.1242/dev.158501
Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human preimplantation epiblastCited by: 143
Author(s): Giuliano Giuseppe Stirparo, Thorsten Boroviak, Ge Guo, Jennifer Nichols, Austin Smith, Paul Bertone
Software Mentions: 9
Published: over 6 years ago
10.1186/s13058-021-01445-4
Single cell transcriptome atlas of mouse mammary epithelial cells across developmentCited by: 19
Author(s): Bhupinder Pal, Yunshun Chen, Michael J. G. Milevskiy, François Vaillant, Lexie Prokopuk, Caleb A. Dawson, Bianca D. Capaldo, Xiaoyu Song, Felicity C. Jackling, Paul Timpson, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 8
Published: about 3 years ago
10.1016/j.celrep.2021.108739
Natural genetic variation determines microglia heterogeneity in wild-derived mouse models of Alzheimer’s diseaseCited by: 40
Author(s): Hongtian Yang, Kristen D. Onos, Kwangbom Choi, Kelly J. Keezer, Daniel A. Skelly, Gregory W. Carter, Gareth R. Howell
Software Mentions: 6
Published: over 3 years ago
10.1016/j.devcel.2018.06.028
Defining Lineage Potential and Fate Behavior of Precursors during Pancreas DevelopmentCited by: 36
Author(s): Magdalena K. Sznurkowska, Édouard Hannezo, Roberta Azzarelli, Steffen Rulands, Sonia Nestorowa, Christopher J. Hindley, Jennifer Nichols, Berthold Göttgens, Meritxell Huch, Anna Philpott, Benjamin D. Simons
Software Mentions: 6
Published: almost 6 years ago
10.26508/lsa.201900612
Interferon lambda 4 can directly activate human CD19<sup>+</sup> B cells and CD8<sup>+</sup> T cellsCited by: 4
Author(s): Mairene Coto‐Llerena, Marco Lepore, Julian Spagnuolo, Daniela Di Blasi, Diego Calabrese, Aleksei Suslov, Glenn R. Bantug, François H. T. Duong, Luigi Terracciano, Gennaro De Libero, Markus H. Heim
Software Mentions: 6
Published: over 3 years ago
10.1016/j.immuni.2020.07.003
Differential IRF8 Transcription Factor Requirement Defines Two Pathways of Dendritic Cell Development in HumansCited by: 130
Author(s): Urszula Cytlak, Anastasia Resteu, Sarah Pagan, Kile Green, Paul Milne, Sheetal Maisuria, David McDonald, Gillian Hulme, Andrew Filby, Benjamin Carpenter, Rachel Queen, Sophie Hambleton, Rosie Hague, Hana Lango Allen, James Thaventhiran, Gina M. Doody, Matthew Collin, Venetia Bigley
Software Mentions: 6
Published: almost 4 years ago
10.1073/pnas.2008890118
OCT4 induces embryonic pluripotency via STAT3 signaling and metabolic mechanismsCited by: 23
Author(s): Giuliano Giuseppe Stirparo, Agata Kurowski, Akira Yanagida, Lawrence E. Bates, Stanley E. Strawbridge, Siarhei Hladkou, Hannah Stuart, Thorsten Boroviak, José C.R. Silva, Jennifer Nichols
Software Mentions: 6
Published: over 3 years ago
10.1186/s12859-017-1589-9
Subgroup detection in genotype data using invariant coordinate selectionCited by: 6
Author(s): Daniel Fischer, Mervi Honkatukia, Maria Tuiskula-Haavisto, Klaus Nordhausen, D. Cavero, Rudolf Preisinger, Johanna Vilkki
Software Mentions: 5
Published: over 7 years ago
10.1111/all.14633
Single‐cell molecular profiling provides a high‐resolution map of basophil and mast cell developmentCited by: 29
Author(s): Fiona Hamey, Winnie Lau, Iwo Kuciński, Xiaonan Wang, Evangelia Diamanti, Nicola K. Wilson, Berthold Göttgens, Joakim S. Dahlin
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2020.569985
Diverse Macrophage Populations Contribute to the Inflammatory Microenvironment in Premalignant Lesions During Localized InvasionCited by: 16
Author(s): Ayman Ibrahim, Matthew Moss, Zane Gray, Michelle D. Rojo, Caitlin M. Burke, Kathryn L. Schwertfeger, Camila O. dos Santos, Heather L. Machado
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13104-020-05357-y
Comprehensive analysis of single-cell RNA sequencing data from healthy human marrow hematopoietic cellsCited by: 4
Author(s): Xin Zhao, Shaojian Gao, Sachiko Kajigaya, Qingguo Liu, Zhijie Wu, Xingmin Feng, Fengkui Zhang, Neal S. Young
Software Mentions: 4
Published: over 3 years ago
10.1093/bioinformatics/btaa198
Automatic identification of relevant genes from low-dimensional embeddings of single-cell RNA-seq dataCited by: 6
Author(s): Philipp Angerer, David Fischer, Fabian J. Theis, Antonio Scialdone, Carsten Marr
Software Mentions: 3
Published: over 4 years ago
10.3389/fimmu.2020.571300
Visualizing Dynamic Changes at the Maternal-Fetal Interface Throughout Human Pregnancy by Mass CytometryCited by: 15
Author(s): Anita van der Zwan, Vincent van Unen, Guillaume Beyrend, Sandra Laban, Carin van der Keur, Hanneke Kapsenberg, Thomas Höllt, Susana M. Chuva de Sousa Lopes, Marie-Louise van der Hoorn, Frits Koning, Frans H.J. Claas, Michael Eikmans, Sebastiaan Heidt
Software Mentions: 2
Published: almost 4 years ago