bioconductor: monocle | Projects | Ecosyste.ms: Papers

10.12688/f1000research.15666.3

A systematic performance evaluation of clustering methods for single-cell RNA-seq data
Cited by: 33
Author(s): Angelo Duò, Mark D. Robinson, Charlotte Soneson
Software Mentions: 17
Published: almost 4 years ago

10.1016/j.stem.2019.07.008

Defining the Identity and Dynamics of Adult Gastric Isthmus Stem Cells
Cited by: 85
Author(s): Seungmin Han, J. Lynn Fink, David J. Jörg, Eunmin Lee, Min Kyu Yum, Lemonia Chatzeli, Sebastian R. Merker, Manon Josserand, Teodora Trendafilova, Amanda Andersson-Rolf, Catherine Dabrowska, Hyunki Kim, Ronald Naumann, Ji–Hyun Lee, Nobuo Sasaki, Richard L. Mort, Onur Basak, Hans Clevers, Daniel E. Stange, Anna Philpott, Jong Kim, Benjamin D. Simons, Bon‐Kyoung Koo
Software Mentions: 17
Published: about 5 years ago

10.1186/s12859-017-1994-0

PIVOT: platform for interactive analysis and visualization of transcriptomics data
Cited by: 30
Author(s): Qin Zhu, Stephen Fisher, Hannah Dueck, Sarah A. Middleton, Mugdha Khaladkar, Junhyong Kim
Software Mentions: 15
Published: almost 7 years ago

10.18632/aging.203353

Development and validation of an intra-tumor heterogeneity-related signature to predict prognosis of bladder cancer: a study based on single-cell RNA-seq
Cited by: 7
Author(s): Ranran Zhou, Jingjing Liang, Qi Chen, Haijun Tian, Cheng Yang, Cundong Liu
Software Mentions: 14
Published: over 3 years ago

10.1038/s42003-019-0554-8

Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome
Cited by: 37
Author(s): Weiyan Chen, Samuel Morabito, Kai Kessenbrock, Tariq Enver, Kerstin B. Meyer, Andrew E. Teschendorff
Software Mentions: 14
Published: over 5 years ago

10.1186/s40478-020-0880-6

Single-nucleus RNA-seq identifies Huntington disease astrocyte states
Cited by: 147
Author(s): Osama Al‐Dalahmah, Alexander A. Sosunov, Ayesha Shaik, Kenneth Ofori, Yang Liu, Jean Paul Vonsattel, István Adorján, Vilas Menon, James E. Goldman
Software Mentions: 14
Published: over 4 years ago

10.1186/s13059-019-1898-6

Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 123
Author(s): Shuang Sun, Jiaqiang Zhu, Ying Ma, Xiang Zhou
Software Mentions: 13
Published: almost 5 years ago

10.1186/s13059-019-1739-7

CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data
Cited by: 33
Author(s): Rebekka Wegmann, Marilisa Neri, Sven Schuierer, Bilada Bilican, Huyen Hartkopf, Florian Nigsch, Felipa Mapa, Annick Waldt, Rachel Cuttat, Max R. Salick, Joe Raymond, Ajamete Kaykas, Guglielmo Roma, Caroline Gubser Keller
Software Mentions: 13
Published: over 5 years ago

10.7717/peerj.10469

BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis
Cited by: 5
Author(s): Daniel Dimitrov, Quan Gu
Software Mentions: 12
Published: almost 4 years ago

10.1242/dev.177428

Novel dynamics of human mucociliary differentiation revealed by single-cell RNA sequencing of nasal epithelial cultures
Cited by: 182
Author(s): Sandra Ruiz García, Marie Deprez, Kévin Lebrigand, Amélie Cavard, Agnès Paquet, Marie-Jeanne Arguel, Virginie Magnone, Marin Truchi, Ignacio Caballero, Sylvie Leroy, Charles‐Hugo Marquette, Brice Marcet, Pascal Barbry, Laure‐Emmanuelle Zaragosi
Software Mentions: 11
Published: about 5 years ago

10.1016/j.celrep.2019.10.024

Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis
Cited by: 227
Author(s): Ross Dobie, John Wilson-Kanamori, Beth E. P. Henderson, J. F. Smith, Kylie P. Matchett, Jordan Raymond Portman, Karolina Wallenborg, Simone Picelli, Анна Загорска, Swetha Pendem, Thomas E. Hudson, Max C. Wu, Grant R. Budas, David G. Breckenridge, Ewen M Harrison, Damian J. Mole, Stephen J. Wigmore, Prakash Ramachandran, Chris P. Ponting, Sarah A. Teichmann, John C. Marioni, Neil C. Henderson
Software Mentions: 10
Published: about 5 years ago

10.18632/aging.102434

Development and validation of a metastasis-associated prognostic signature based on single-cell RNA-seq in clear cell renal cell carcinoma
Cited by: 28
Author(s): Chuanjie Zhang, Hongchao He, Xin Hu, Ao Liu, Da Huang, Yu Xu, Lu Chen, Danfeng Xu
Software Mentions: 10
Published: almost 5 years ago

10.1038/s41422-020-00451-z

Sequential fate-switches in stem-like cells drive the tumorigenic trajectory from human neural stem cells to malignant glioma
Cited by: 38
Author(s): Xiaofei Wang, Ran Zhou, Yanzhen Xiong, Lingling Zhou, Xiang Yan, Manli Wang, Li Fan, Chuanxing Xie, Yiming Zhang, Zongyao Huang, Chaoqiong Ding, Ke Shi, Weida Li, Liu Yu, Cao Zeyi, Zhenning Zhang, Shengtao Zhou, Chong Chen, Yan Zhang, Lu Chen, Yuan Wang
Software Mentions: 10
Published: almost 4 years ago

10.1186/s12915-019-0709-6

Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment
Cited by: 31
Author(s): Hang Ruan, Yingnan Liao, Zongna Ren, Lin Mao, Fang Yao, Yu Peng, Youqiong Ye, Zhao Zhang, Shengli Li, Hanshi Xu, Jiewei Liu, Lixia Diao, Bingying Zhou, Leng Han, Li Wang
Software Mentions: 10
Published: almost 5 years ago

10.1038/s41422-021-00562-1

Distinct immune signatures discriminate between asymptomatic and presymptomatic SARS-CoV-2pos subjects
Cited by: 8
Author(s): Shanhe Yu, Caixia Di, Shijun Chen, Mingquan Guo, Jiayang Yan, Zhaoqin Zhu, Li Liu, Rilu Feng, Yinyin Xie, Ruihong Zhang, Juan Chen, Mengxi Wang, Dong Wei, Hai Fang, Tong Yin, Jinyan Huang, Sai‐Juan Chen, Hongzhou Lu, Jiang Zhu, Jieming Qu
Software Mentions: 9
Published: about 3 years ago

10.3390/mps4020028

The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow
Cited by: 2
Author(s): Daniele Mercatelli, Nicola Balboni, Francesca De Giorgio, Emanuela Aleo, Caterina Garone, Federico M. Giorgi
Software Mentions: 9
Published: over 3 years ago

10.3389/fncel.2020.00065

Single-Cell Analysis of Neuroinflammatory Responses Following Intracranial Injection of G-Deleted Rabies Viruses
Cited by: 29
Author(s): Kee Wui Huang, Bernardo L. Sabatini
Software Mentions: 9
Published: over 4 years ago

10.1172/jci.insight.138729

CD28 costimulation drives tumor-infiltrating T cell glycolysis to promote inflammation
Cited by: 45
Author(s): Kathryn E. Beckermann, Rachel Hongo, Xiang Ye, Kirsten Young, Katie Carbonell, Diana C Contreras Healey, Peter J. Siska, Sierra Barone, Caroline E. Roe, Christof C. Smith, Benjamin G. Vincent, Frank M. Mason, Jonathan M. Irish, W. Kimryn Rathmell, Jeffrey C. Rathmell
Software Mentions: 9
Published: about 4 years ago

10.3389/fgene.2019.01331

Reproducibility of Methods to Detect Differentially Expressed Genes from Single-Cell RNA Sequencing
Cited by: 50
Author(s): Tian Mou, Wenjiang Deng, Fengyun Gu, Yudi Pawitan, Trung Nghia Vu
Software Mentions: 8
Published: almost 5 years ago

10.1186/s12967-021-03076-x

A novel immune subtype classification of ER-positive, PR-negative and HER2-negative breast cancer based on the genomic and transcriptomic landscape
Cited by: 4
Author(s): Peiling Xie, Rui An, Shibo Yu, Jing He, Huimin Zhang
Software Mentions: 8
Published: about 3 years ago

10.7150/thno.55075

Single-cell transcriptome analysis of the heterogeneous effects of differential expression of tumor PD-L1 on responding TCR-T cells
Cited by: 2
Author(s): Renpeng Ding, Shang Liu, Shanshan Wang, Huanyi Chen, Fei Wang, Qumiao Xu, Linnan Zhu, Xuan Dong, Ying Gu, Xiuqing Zhang, Cheng‐Chi Chao, Qianqian Gao
Software Mentions: 8
Published: almost 4 years ago

10.7554/eLife.56980

m6A RNA methylation impacts fate choices during skin morphogenesis
Cited by: 18
Author(s): Linghe Xi, Thomas Carroll, Irina Matos, Ji‐Dung Luo, Lisa Polak, H. Amalia Pasolli, Samie R. Jaffrey, Elaine Fuchs
Software Mentions: 8
Published: about 4 years ago

10.3389/fimmu.2021.709986

Dissecting Tumor Antigens and Immune Subtypes of Glioma to Develop mRNA Vaccine
Cited by: 30
Author(s): Hua Zhong, Shuai Liu, Fang Cao, Yi Zhao, Jianguo Zhou, Feng Tang, Zhaohua Peng, Yangsheng Li, Shen Xu, Chunlin Wang, Guohua Yang, Zhiqiang Li
Software Mentions: 7
Published: about 3 years ago

10.1186/s12935-021-02154-w

Study of cellular heterogeneity and differential dynamics of autophagy in human embryonic kidney development by single-cell RNA sequencing
Cited by: 2
Author(s): Wenjin Chen, Xiuwu Pan, Jian Chu, Da Xu, Jia-Xin Chen, Weijie Chen, Linhui Wang, Xingang Cui
Software Mentions: 7
Published: about 3 years ago

10.1002/1878-0261.12569

Single‐cell RNA‐seq reveals the invasive trajectory and molecular cascades underlying glioblastoma progression
Cited by: 34
Author(s): Bo Pang, Jiu Hua Xu, Jing Hu, Fenghua Guo, Linyun Wan, Mingjiang Cheng, Lin Pang
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pgen.1008506

Latent transcriptional variations of individual Plasmodium falciparum uncovered by single-cell RNA-seq and fluorescence imaging
Cited by: 21
Author(s): Katelyn A. Walzer, Hélène Fradin, Liane Y. Emerson, David L. Corcoran, Jen‐Tsan Chi
Software Mentions: 7
Published: almost 5 years ago

10.7150/jca.58076

An integrative microenvironment approach for laryngeal carcinoma: the role of immune/methylation/autophagy signatures on disease clinical prognosis and single-cell genotypes
Cited by: 18
Author(s): Xueran Kang, Yisheng Chen, Bin Yi, Yan Xin, Chenyan Jiang, Bin Chen, Lixing Lu, Yuxing Sun, Ruihan Shi
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41421-021-00312-y

A single-cell atlas of liver metastases of colorectal cancer reveals reprogramming of the tumor microenvironment in response to preoperative chemotherapy
Cited by: 42
Author(s): Li-Heng Che, Jingwen Li, Jian-Ping Huo, Rong Luo, Rui-Ming Xu, He Cai, Yuqing Li, Anni Zhou, Pinbo Huang, Yongyu Chen, Weijian Ni, Yunxia Zhou, Yuan-Yuan Liu, Huiyan Li, Rong Zhou, Ming Hui, Jianming Li
Software Mentions: 7
Published: about 3 years ago

10.3389/fcimb.2021.604129

Using scRNA-seq to Identify Transcriptional Variation in the Malaria Parasite Ookinete Stage
Cited by: 6
Author(s): Kathrin Witmer, Farah A. Dahalan, Tom Metcalf, Arthur M. Talman, Virginia M. Howick, Mara K. N. Lawniczak
Software Mentions: 7
Published: over 3 years ago

10.3389/fonc.2020.596318

Single-Cell RNA-Seq Analysis Reveals Microenvironmental Infiltration of Plasma Cells and Hepatocytic Prognostic Markers in HCC With Cirrhosis
Cited by: 40
Author(s): Siwen Zhang, Zhenhao Liu, Dan Wu, Lanming Chen, Lu Xie
Software Mentions: 7
Published: about 4 years ago

10.1016/j.celrep.2020.107628

Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth
Cited by: 156
Author(s): Sarah Davidson, Mirjana Efremova, Angela Riedel, Bidesh Mahata, Jhuma Pramanik, Jani Huuhtanen, Gozde Kar, Roser Vento‐Tormo, Tzachi Hagai, Xi Chen, Muzlifah Haniffa, Jacqueline D. Shields, Sarah A. Teichmann
Software Mentions: 6
Published: over 4 years ago

10.1111/cpr.13116

Single‐cell profiling reveals distinct immune phenotypes that contribute to ischaemia‐reperfusion injury after steatotic liver transplantation
Cited by: 19
Author(s): Xinyu Yang, Di Lu, Rui Wang, Zhengxing Lian, Zuyuan Lin, Jianyong Zhuo, Hao Chen, Modan Yang, Winyen Tan, Mengfan Yang, Xuyong Wei, Qiang Wei, Shusen Zheng, Xiao Xu
Software Mentions: 6
Published: about 3 years ago

10.3389/fonc.2021.715552

Single-Cell RNA Sequencing Reveals the Migration of Osteoclasts in Giant Cell Tumor of Bone
Cited by: 14
Author(s): Wei Feng, Mingwei He, Xiaohong Jiang, Huijiang Liu, Tianyu Xie, Zhaojie Qin, Qian Huang, Shijie Liao, Chengsen Lin, Jun He, Jiake Xu, Jie Ma, Yun Liu, Qingjun Wei
Software Mentions: 6
Published: about 3 years ago

10.1038/sdata.2018.192

Single-cell RNA sequencing of adult mouse testes
Cited by: 42
Author(s): Söeren Lukassen, Elisabeth Bosch, Arif B. Ekici, Andreas Winterpacht
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pgen.1007788

Single-cell RNA-sequencing reveals transcriptional dynamics of estrogen-induced dysplasia in the ovarian surface epithelium
Cited by: 16
Author(s): Nhung Vuong, David P. Cook, Laura A. Forrest, Lauren E. Carter, Pascale Robineau-Charette, Joshua M. Kofsky, Kendra M. Hodgkinson, Barbara C. Vanderhyden
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41422-020-0300-2

Embryonic endothelial evolution towards first hematopoietic stem cells revealed by single-cell transcriptomic and functional analyses
Cited by: 80
Author(s): Siyuan Hou, Zongcheng Li, Xiaona Zheng, Yun Gao, Ji Dong, Yanli Ni, Xiaobo Wang, Yunqiao Li, Xiaochen Ding, Zhilin Chang, Shuaili Li, Yuqiong Hu, Xiaoying Fan, Yu Hou, Lu Wen, Bing Liu, Fuchou Tang, Yu Lan
Software Mentions: 6
Published: over 4 years ago

10.3389/fcell.2021.638374

Single-Cell Analysis Reveals Spatial Heterogeneity of Immune Cells in Lung Adenocarcinoma
Cited by: 9
Author(s): Youyu Wang, Xiaohua Li, Peng Shu, Honglin Hu, Yuntao Wang, Mengqi Shao, Gang Feng, Yu Liu, Yifeng Bai
Software Mentions: 6
Published: about 3 years ago

10.1016/j.immuni.2019.05.002

Polychromic Reporter Mice Reveal Unappreciated Innate Lymphoid Cell Progenitor Heterogeneity and Elusive ILC3 Progenitors in Bone Marrow
Cited by: 85
Author(s): Jennifer Walker, Paula A. Clark, Alastair Crisp, Jillian L. Barlow, Aydan C H Szeto, Ana Carolina Franco Ferreira, Batika M. J. Rana, Helen E. Jolin, Noé Rodríguez-Rodríguez, Meera Sivasubramaniam, Richard Pannell, James Cruickshank, Maria Daly, Liora Haim-Vilmovsky, Sarah A. Teichmann, Andrew N. J. McKenzie
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.1006555

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps
Cited by: 53
Author(s): Camden Jansen, Ricardo N. Ramirez, Nicole El-Ali, David Green, Jesper Tegnér, Matthias Merkenschlager, Ana Conesa, A Mortazavi
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-020-02027-x

Accounting for cell type hierarchy in evaluating single cell RNA-seq clustering
Cited by: 19
Author(s): Zhijin Wu, Hao Wu
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-018-24725-0

Characterization of germ cell differentiation in the male mouse through single-cell RNA sequencing
Cited by: 68
Author(s): Söeren Lukassen, Elisabeth Bosch, Arif B. Ekici, Andreas Winterpacht
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.63450

Temporal evolution of single-cell transcriptomes of Drosophila olfactory projection neurons
Cited by: 28
Author(s): Qijing Xie, Maria Brbić, Felix Horns, Sai Saroja Kolluru, Robert C. Jones, Jiefu Li, Anay R Reddy, Anthony Xie, Sayeh Kohani, Zhuoran Li, Colleen N. McLaughlin, Tongchao Li, Chuanyun Xu, David Vacek, David J. Luginbuhl, Jure Leskovec, Stephen R. Quake, Liqun Luo, Hongjie Li
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pbio.3000705

Vascularized human cortical organoids (vOrganoids) model cortical development in vivo
Cited by: 178
Author(s): Yingchao Shi, Le Sun, Mengdi Wang, Jianwei Liu, Shaobo Zhong, Rui Li, Peng Li, Dadong Guo, Fang Ai, Ruiguo Chen, Woo Ping Ge, Qian Wu, Xiaoqun Wang
Software Mentions: 4
Published: over 4 years ago

10.7554/eLife.66954

Single-cell RNA-seq analysis reveals penaeid shrimp hemocyte subpopulations and cell differentiation process
Cited by: 45
Author(s): Keiichiro Koiwai, Takashi Koyama, Soichiro Tsuda, Atsushi Toyoda, Kiyoshi Kikuchi, Hiroaki Suzuki, Ryuji Kawano
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.47138

Testis single-cell RNA-seq reveals the dynamics of de novo gene transcription and germline mutational bias in Drosophila
Cited by: 94
Author(s): Evan Witt, Sigi Benjamin, Nicolas Svetec, Li Zhao
Software Mentions: 4
Published: about 5 years ago

10.3389/fcell.2021.699263

Spatiotemporal and Functional Heterogeneity of Hematopoietic Stem Cell-Competent Hemogenic Endothelial Cells in Mouse Embryos
Cited by: 5
Author(s): Yunqiao Li, Yandong Gong, Siyuan Hou, Tao Huang, Haizhen Wang, Di Liu, Yanli Ni, Chaojie Wang, Junliang Wang, Jun Hou, Ruihua Yang, Yan Jing, Guangyu Zhang, Bing Liu, Yu Lan
Software Mentions: 4
Published: about 3 years ago

10.1038/s41419-021-03832-3

Comparison of the major cell populations among osteoarthritis, Kashin–Beck disease and healthy chondrocytes by single-cell RNA-seq analysis
Cited by: 35
Author(s): Wang Xi, Yujie Ning, Pan Zhang, Blandine Poulet, Ruitian Huang, Yi Gong, Minhan Hu, Cheng Li, Rong Zhou, Mikko J. Lammi, Xiong Guo
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.48660

Stochastic cell-cycle entry and cell-state-dependent fate outputs of injury-reactivated tectal radial glia in zebrafish
Cited by: 13
Author(s): Song Yu, Jie He
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.66547

Dual expression of Atoh1 and Ikzf2 promotes transformation of adult cochlear supporting cells into outer hair cells
Cited by: 31
Author(s): Shuangwen Sun, Shuting Li, Zhengnan Luo, Minhui Ren, Shunji He, Guangqin Wang, Zhiyong Liu
Software Mentions: 4
Published: about 3 years ago

10.1093/gigascience/giaa113

Prediction of single-cell gene expression for transcription factor analysis
Cited by: 11
Author(s): Fatemeh Behjati Ardakani, Kathrin Kattler, Tobias Heinen, Florian Schmidt, David Feuerborn, Gilles Gasparoni, Konstantin Lepikhov, Patrick Nell, Jan G. Hengstler, Jörn Walter, Marcel H. Schulz
Software Mentions: 4
Published: about 4 years ago

10.3389/fcell.2021.702112

Characterizing the Metabolic and Immune Landscape of Non-small Cell Lung Cancer Reveals Prognostic Biomarkers Through Omics Data Integration
Cited by: 5
Author(s): Fengjiao Wang, Yuanfu Zhang, Yangyang Hao, Xuexin Li, Yue Qi, Mengyu Xin, Qifan Xiao, Peng Wang
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0231250

Decomposition of a set of distributions in extended exponential family form for distinguishing multiple oligo-dimensional marker expression profiles of single-cell populations and visualizing their dynamics
Cited by: 3
Author(s): Daigo Okada, Ryo Yamada
Software Mentions: 3
Published: over 4 years ago

10.1016/j.isci.2021.102410

Induced lineage promiscuity undermines the efficiency of all-trans-retinoid-acid-induced differentiation of acute myeloid leukemia
Cited by: 1
Author(s): Yijia Tang, Xin Tian, Zihan Xu, Junke Cai, Han Liu, Nan Liu, Chen Zhu, Sai‐Juan Chen, Feng Liu
Software Mentions: 3
Published: over 3 years ago

10.1161/ATVBAHA.119.312732

Single-Cell RNA-Sequencing and Metabolomics Analyses Reveal the Contribution of Perivascular Adipose Tissue Stem Cells to Vascular Remodeling
Cited by: 65
Author(s): Wenduo Gu, Witold Nowak, Yao Xie, Alexandra Le Bras, Yanhua Hu, Jiacheng Deng, Shirin Issa Bhaloo, Yao Lu, Hong Yuan, Efthymios Fidanis, Alka Saxena, Tokuwa Kanno, A. James Mason, Józef Dulak, Jingjing Cai, Qingbo Xu
Software Mentions: 3
Published: about 5 years ago

10.3389/fimmu.2021.689019

The Immune Atlas of Human Deciduas With Unexplained Recurrent Pregnancy Loss
Cited by: 40
Author(s): Pengfei Chen, Lei Zhou, Jiying Chen, Ying Lu, Chaoxia Cao, Shuangli Lv, Zhihong Wang, Liping Wang, Jiao Chen, Xinglin Hu, Zijing Wu, Xiaohua Zhou, Danna Su, Xiaofang Deng, Changchun Zeng, Huiyun Wang, Zuhui Pu, Ruiying Diao, Lisha Mou
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2021.608629

The Novel Key Genes of Non-obstructive Azoospermia Affect Spermatogenesis: Transcriptomic Analysis Based on RNA-Seq and scRNA-Seq Data
Cited by: 10
Author(s): Hongbo He, Yu Fan, Shen Wang, Keyan Chen, Lijun Zhang, Shuang Lou, Qiaomin Zhang, Siping Chen, Xinhua Yuan, Xingwang Jia, Yiwen Zhou
Software Mentions: 3
Published: over 3 years ago

10.1186/s13059-016-0939-7

Single-cell profiling of human megakaryocyte-erythroid progenitors identifies distinct megakaryocyte and erythroid differentiation pathways
Cited by: 123
Author(s): Bethan Psaila, Nikolaos Barkas, Deena Iskander, Anindita Roy, Sarah N. Anderson, Neil Ashley, Valentina S Caputo, Jens Lichtenberg, Sandra Loaiza, David M. Bodine, Anastasios Karadimitris, Adam J. Mead, Irene Roberts
Software Mentions: 2
Published: over 8 years ago

10.1002/1878-0261.12910

Single‐cell transcriptomics reveal the intratumoral landscape of infiltrated T‐cell subpopulations in oral squamous cell carcinoma
Cited by: 22
Author(s): Jingtao Chen, Jiefeng Yang, Huan Li, Zhongyuan Yang, Xing Zhang, Xiyuan Li, Jia Wang, Ying Zhang, Shuwei Chen, Ming Song
Software Mentions: 2
Published: over 3 years ago

10.1002/JLB.6MR0320-234R

Unravelling the heterogeneity and dynamic relationships of tumor-infiltrating T cells by single-cell RNA sequencing analysis
Cited by: 19
Author(s): Xin Yu, Lei Zhang, Ashutosh Chaudhry, Aaron S. Rapaport, Wenjun Ouyang
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers13040768

Notch Signaling Pathway in Cancer—Review with Bioinformatic Analysis
Cited by: 17
Author(s): Dorota Anusewicz, Magdalena Orzechowska, Andrzej K. Bednarek
Software Mentions: 2
Published: over 3 years ago

Projects: bioconductor: monocle

Papers Mentioning monocle 60