Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-017-1994-0
https://doi.org/10.1186/s12859-017-1994-0
PIVOT: platform for interactive analysis and visualization of transcriptomics data
Cited by: 30
Author(s): Qin Zhu, Stephen Fisher, Hannah Dueck, Sarah A. Middleton, Mugdha Khaladkar, Junhyong Kim
Published: almost 7 years ago
Software Mentions 15
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqPapers that mentioned: 60
bioconductor: vsn
Variance stabilization and calibration for microarray dataPapers that mentioned: 91
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071
pypi: monocle
An async programming framework with a blocking look-alike syntaxPapers that mentioned: 60