cran: networkD3 | Projects | Ecosyste.ms: Papers

10.1016/j.scitotenv.2020.140792

ESPRES: A web application for interactive analysis of multiple pressures in aquatic ecosystems
Cited by: 4
Author(s): Ángel Údias, Alberto Pistocchi, Olga Vigiak, Bruna Grizzetti, F. Bouraoui, César Alfaro
Software Mentions: 18
Published: about 4 years ago

10.3390/cells10082013

ChroMo, an Application for Unsupervised Analysis of Chromosome Movements in Meiosis
Cited by: 0
Author(s): Daniel León-Periñán, Alfonso Fernández-Álvarez
Software Mentions: 17
Published: over 3 years ago

10.1093/jas/skaa402

ASAS-NANP SYMPOSIUM: prospects for interactive and dynamic graphics in the era of data-rich animal science1
Cited by: 4
Author(s): Gota Morota, Hao Cheng, Dianne Cook, Emi Tanaka
Software Mentions: 15
Published: almost 4 years ago

10.1186/s12859-017-1994-0

PIVOT: platform for interactive analysis and visualization of transcriptomics data
Cited by: 30
Author(s): Qin Zhu, Stephen Fisher, Hannah Dueck, Sarah A. Middleton, Mugdha Khaladkar, Junhyong Kim
Software Mentions: 15
Published: almost 7 years ago

10.1186/s12967-021-02773-x

Multi-omics characterization and validation of invasiveness-related molecular features across multiple cancer types
Cited by: 5
Author(s): Guoshu Bi, Jiaqi Liang, Yuansheng Zheng, Runmei Li, Mengnan Zhao, Yiwei Huang, Cheng Zhan, Songtao Xu, Hong Fan
Software Mentions: 15
Published: over 3 years ago

10.1186/s13073-021-00893-z

Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers
Cited by: 18
Author(s): Alaric W. D’Souza, Manish Boolchandani, Sanket Patel, Gianluca Galazzo, Jarne M. van Hattem, Maris S Arcilla, Damian C. Melles∗, Menno D. de Jong, Constance Schultsz, Gautam Dantas, John Penders
Software Mentions: 13
Published: over 3 years ago

10.1186/s12967-021-02889-0

Pan-cancer characterization of metabolism-related biomarkers identifies potential therapeutic targets
Cited by: 6
Author(s): Guoshu Bi, Yunyi Bian, Jiaqi Liang, Jiacheng Yin, Runmei Li, Mengnan Zhao, Yiwei Huang, Tao Lu, Cheng Zhan, Hong Fan, Qun Wang
Software Mentions: 13
Published: over 3 years ago

10.12688/gatesopenres.12929.1

Towards an off-grid fecal sludge treatment unit: demonstrating energy positive thermal treatment
Cited by: 1
Author(s): Taylor Myers, Lars Schoebitz, Stuart Woolley, Jaime Sanchez Ferragut, James O. Thostenson, Kathy Jooss, Jeffery Piascik, August Frechette, Nico Hotz, Brian R. Stoner, J.B. Hallowell
Software Mentions: 12
Published: over 5 years ago

10.3389/fgene.2019.01079

HiCeekR: A Novel Shiny App for Hi-C Data Analysis
Cited by: 13
Author(s): Lucio Di Filippo, Dario Righelli, Miriam Gagliardi, Maria R. Matarazzo, Claudia Angelini
Software Mentions: 12
Published: about 5 years ago

10.1186/s12859-016-1260-x

MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps
Cited by: 14
Author(s): Bohdan B. Khomtchouk, John L. Hennessy, Claes Wahlestedt
Software Mentions: 12
Published: about 8 years ago

10.1371/journal.pone.0216723

A metadata approach to evaluate the state of ocean knowledge: Strengths, limitations, and application to Mexico
Cited by: 10
Author(s): Juliano Palacios‐Abrantes, Andrés M. Cisneros‐Montemayor, Miguel Á. Cisneros-Mata, Laura Rodríguez, Francisco Arreguı́n-Sánchez, Verónica Aguilar, Santiago Domínguez-Sánchez, Stuart Fulton, Raquel López-Sagástegui, Héctor Reyes‐Bonilla, Rocío Rivera-Campos, Silvia Salas, Nuno Simões, William W. L. Cheung
Software Mentions: 10
Published: over 5 years ago

10.1371/journal.pbio.2004045

A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates
Cited by: 41
Author(s): Jean-Louis Plouhinec, Sofía Medina-Ruíz, Caroline Borday, Elsa Bernard, Jean-Philippe Vert, Michael B. Eisen, Richard M. Harland, Anne H. Monsoro-Burq
Software Mentions: 9
Published: about 7 years ago

10.1093/rheumatology/keab060

Do people with rheumatoid arthritis maintain their physical activity level at treatment onset over the first year of methotrexate therapy?
Cited by: 4
Author(s): James M Gwinnutt, Husain Alsafar, Kimme L Hyrich, Mark Lunt, Anne Barton, Suzanne Verstappen, Rams co-investigators
Software Mentions: 8
Published: almost 4 years ago

10.1099/mgen.0.000244

Where the plasmids roam: large-scale sequence analysis reveals plasmids with large host ranges
Cited by: 10
Author(s): Lauren Brooks, Mo Kaze, Mark Sistrom
Software Mentions: 7
Published: almost 6 years ago

10.3389/fonc.2020.622251

Screening and Identification of Four Prognostic Genes Related to Immune Infiltration and G-Protein Coupled Receptors Pathway in Lung Adenocarcinoma
Cited by: 3
Author(s): Yan Wang, Longqing Qiu, Yu Chen, Xia Zhang, Yang Peng, Feng Xu
Software Mentions: 7
Published: almost 4 years ago

10.3390/nu13082610

Testing and Prescribing Vitamin B12 in Swiss General Practice: A Survey among Physicians
Cited by: 1
Author(s): Katarina Bardheci, Levy Jäger, L. Risch, Thomas Rosemann, Jakob M Burgstaller, Stefan Markun
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-020-03818-6

Calculating the most likely intron splicing orders in S. pombe, fruit fly, Arabidopsis thaliana, and humans
Cited by: 2
Author(s): Meng Li
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0227258

Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2
Cited by: 29
Author(s): Nhi Hin, Morgan Newman, Jan Kaslin, Alon M. Douek, Amanda L. Lumsden, Seyyed Hani Moussavi Nik, Yang Dong, Xin Zhou, Noralyn B. Mañucat-Tan, Alastair J. Ludington, David L. Adelson, Stephen Pederson, Michael Lardelli
Software Mentions: 6
Published: almost 5 years ago

10.3389/fmicb.2021.614957

Genomic Metrics Applied to Rhizobiales (Hyphomicrobiales): Species Reclassification, Identification of Unauthentic Genomes and False Type Strains
Cited by: 34
Author(s): Camila Gazolla Volpiano, Fernando Hayashi Sant’Anna, Adriana Ambrosini, Jackson Freitas Brilhante de São José, Anelise Beneduzi, William B. Whitman, Emanuel Maltempi de Souza, Bruno Brito Lisboa, Luciano Kayser Vargas, Luciane Maria Pereira Passaglia
Software Mentions: 6
Published: over 3 years ago

10.7150/jca.55570

Upregulating <i>KTN1</i> promotes Hepatocellular Carcinoma progression
Cited by: 1
Author(s): Jian Pan, Naixia Chao, Yao‐Yao Zhang, Tianyi Huang, Chengxiao Chen, Qiuhong Qin, Jinhong Guo, Rongshi Huang, Guopei Luo
Software Mentions: 6
Published: almost 4 years ago

10.1007/s00248-020-01657-9

Identifying Potential Hosts of Short-Branch Microsporidia
Cited by: 3
Author(s): Annemie Doliwa, Micah Dunthorn, Erika Rassoshanska, Frédéric Mahe, David Bass, Camila Duarte Ritter
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-020-06915-1

Deciphering the mode of action and position of genetic variants impacting on egg number in broiler breeders
Cited by: 7
Author(s): Eirini Tarsani, Andreas Kranis, Gerasimos Maniatis, Santiago Avendaño, Ariadne L. Hager-Theodorides, A. Kominakis
Software Mentions: 5
Published: over 4 years ago

10.3390/ijms21030751

Effect of Bortezomib on Global Gene Expression in PC12-Derived Nerve Cells
Cited by: 10
Author(s): Karolina Łuczkowska, Dorota Rogińska, Zofia Ulańczyk, Bogusław Machaliński
Software Mentions: 5
Published: almost 5 years ago

10.1093/database/baz051

GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer
Cited by: 3
Author(s): Ying Wang, Yueqian Wang, Shuangkuai Wang, Yuantao Tong, Ling Jin, Hui Zong, Rongbin Zheng, Jiancheng Yang, Zeyu Zhang, En Ouyang, Min Zhou, Xiaoyan Zhang
Software Mentions: 4
Published: almost 6 years ago

10.1111/geb.13197

Simulating forest resilience: A review
Cited by: 41
Author(s): Katharina Albrich, Werner Rammer, Monica G. Turner, Zak Ratajczak, Kristin H. Braziunas, Winslow D. Hansen, Rupert Seidl
Software Mentions: 4
Published: about 4 years ago

10.3389/fgene.2020.00418

Construction and Analysis of a ceRNA Network Reveals Potential Prognostic Markers in Colorectal Cancer
Cited by: 12
Author(s): Li Guo, Guowei Yang, Yihao Kang, Sunjing Li, Rui Duan, Lulu Shen, Wenwen Jiang, Bowen Qian, Zibo Yin, Tingming Liang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.ppat.1009439

A novel cell culture system modeling the SARS-CoV-2 life cycle
Cited by: 81
Author(s): Xiaohui Ju, Yangyong Zhu, Yuyan Wang, Jingrui Li, Jiaxing Zhang, Mingli Gong, Wenlin Ren, Sai Li, Jin Zhong, Linqi Zhang, Qiangfeng Cliff Zhang, Rong Zhang, Qiang Ding
Software Mentions: 3
Published: over 3 years ago

10.1007/s00335-019-09804-5

New models for human disease from the International Mouse Phenotyping Consortium
Cited by: 47
Author(s): Pilar Cacheiro, Melissa Haendel, Damian Smedley
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2021.683410

Integrated Metagenomic Assessment of Multiple Pre-harvest Control Points on Lettuce Resistomes at Field-Scale
Cited by: 4
Author(s): Lauren Wind, Ishi Keenum, Suraj Gupta, Partha Pratim Ray, Katharine F. Knowlton, Monica A. Ponder, W. Cully Hession, Amy Pruden, Leigh‐Anne Krometis
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-64326-4

Polymorphisms in miRNA binding sites involved in metabolic diseases in mice and humans
Cited by: 7
Author(s): Pascal Gottmann, Meriem Ouni, Lisa Zellner, Markus Jähnert, Kilian Rittig, Dirk Walther, Annette Schürmann
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-019-45520-5

Discovery and characterization of functional modules associated with body weight in broilers
Cited by: 16
Author(s): Eirini Tarsani, Andreas Kranis, Gerasimos Maniatis, Santiago Avendaño, Ariadne L. Hager-Theodorides, A. Kominakis
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0243886

Adaptation and resilience of commercial fishers in the Northeast United States during the early stages of the COVID-19 pandemic
Cited by: 53
Author(s): Sarah Lindley Smith, Abigail S. Golden, Victoria C. Ramenzoni, Douglas R. Zemeckis, Olaf P. Jensen
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12934-020-01430-0

Gut microbial characteristics of adult patients with allergy rhinitis
Cited by: 31
Author(s): Lihong Zhu, Feng Xu, Wenrong Wan, Bin Yu, Lin Tang, Yiming Yang, Yali Du, Zhangran Chen, Hongxiang Xu
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms21010350

Molecular Mechanisms of Bortezomib Action: Novel Evidence for the miRNA–mRNA Interaction Involvement
Cited by: 18
Author(s): Karolina Łuczkowska, Dorota Rogińska, Zofia Ulańczyk, Edyta Paczkowska, Christian A. Schmidt, Bogusław Machaliński
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.00576

Integrated Transcriptomic and Proteomic Analyses of the Interaction Between Chicken Synovial Fibroblasts and Mycoplasma synoviae
Cited by: 5
Author(s): Rui Li, Bin Xu, Shuang Yu, Jingfeng Zhang, Huawei Sun, Chuanmin Liu, Fengying Lu, Qunxing Pan, Xiaofei Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12889-020-09873-1

Management of uncomplicated malaria among children under five years at public and private sector facilities in Mali
Cited by: 3
Author(s): Seydou Fomba, Daouda Koné, Bakary Doumbia, Diadier Diallo, Thomas Druetz, Lia Florey, Thomas P. Eisele, Erin Eckert, Jules Mihigo, Ruth A. Ashton
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22179209

miRNAs as Regulators of the Early Local Response to Burn Injuries
Cited by: 5
Author(s): Ines Foessl, Christoph Haudum, Ivan Vidakovic, Peter Ruth, Joakim Franz, Selma Mautner, Sonja Kainz, Elisabeth Hofmann, Barbara Obermayer‐Pietsch, Thomas Birngruber, Petra Kotzbeck
Software Mentions: 1
Published: about 3 years ago

Ecosyste.ms: Papers

Projects: cran: networkD3

Papers Mentioning networkD3 37