Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12967-021-02889-0

https://doi.org/10.1186/s12967-021-02889-0

Pan-cancer characterization of metabolism-related biomarkers identifies potential therapeutic targets

Cited by: 6
Author(s): Guoshu Bi, Yunyi Bian, Jiaqi Liang, Jiacheng Yin, Runmei Li, Mengnan Zhao, Yiwei Huang, Tao Lu, Cheng Zhan, Hong Fan, Qun Wang
Published: over 3 years ago

Software Mentions 13

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: ConsensusClusterPlus
ConsensusClusterPlus
Papers that mentioned: 313
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: networkD3
D3 JavaScript Network Graphs from R
Papers that mentioned: 37
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
pypi: arcane
Python library for creating dynamic websites.
Papers that mentioned: 1
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690