Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12967-021-02773-x

https://doi.org/10.1186/s12967-021-02773-x

Multi-omics characterization and validation of invasiveness-related molecular features across multiple cancer types

Cited by: 5
Author(s): Guoshu Bi, Jiaqi Liang, Yuansheng Zheng, Runmei Li, Mengnan Zhao, Yiwei Huang, Cheng Zhan, Songtao Xu, Hong Fan
Published: over 3 years ago

Software Mentions 15

bioconductor: clusterProfiler

A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: maftools

Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288

cran: circlize

Circular Visualization
Papers that mentioned: 260

cran: forestplot

Advanced Forest Plot Using 'grid' Graphics
Papers that mentioned: 146

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: ggpubr

'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: networkD3

D3 JavaScript Network Graphs from R
Papers that mentioned: 37

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: survminer

Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473

pypi: analysis

Source code analysis of Python programs
Papers that mentioned: 2,036

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555