Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-021-00893-z

https://doi.org/10.1186/s13073-021-00893-z

Cited by: 18
Author(s): Alaric W. D’Souza, Manish Boolchandani, Sanket Patel, Gianluca Galazzo, Jarne M. van Hattem, Maris S Arcilla, Damian C. Melles∗, Menno D. de Jong, Constance Schultsz, Gautam Dantas, John Penders
Published: almost 3 years ago

Software Mentions 13

bioconductor: DirichletMultinomial

Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Papers that mentioned: 9

cran: cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298

cran: EMT

Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate Data
Papers that mentioned: 108

cran: genoPlotR

Plot Publication-Grade Gene and Genome Maps
Papers that mentioned: 96

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: ggpubr

'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856

cran: lme4

Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267

cran: networkD3

D3 JavaScript Network Graphs from R
Papers that mentioned: 37

cran: PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292

cran: Rmisc

Ryan Miscellaneous
Papers that mentioned: 51

cran: sf

Simple Features for R
Papers that mentioned: 125

cran: spData

Datasets for Spatial Analysis
Papers that mentioned: 3

pypi: shortbred

ShortBRED: a system for profiling protein families of interest at very high specificity in shotgun meta’omic sequencing data
Papers that mentioned: 1