Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13073-021-00893-z

https://doi.org/10.1186/s13073-021-00893-z

Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers

Cited by: 18
Author(s): Alaric W. D’Souza, Manish Boolchandani, Sanket Patel, Gianluca Galazzo, Jarne M. van Hattem, Maris S Arcilla, Damian C. Melles∗, Menno D. de Jong, Constance Schultsz, Gautam Dantas, John Penders
Published: over 3 years ago

Software Mentions 13

bioconductor: DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Papers that mentioned: 9
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: EMT
Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate Data
Papers that mentioned: 108
cran: genoPlotR
Plot Publication-Grade Gene and Genome Maps
Papers that mentioned: 96
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: networkD3
D3 JavaScript Network Graphs from R
Papers that mentioned: 37
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: Rmisc
Ryan Miscellaneous
Papers that mentioned: 51
cran: sf
Simple Features for R
Papers that mentioned: 125
cran: spData
Datasets for Spatial Analysis
Papers that mentioned: 3
pypi: shortbred
ShortBRED: a system for profiling protein families of interest at very high specificity in shotgun meta’omic sequencing data
Papers that mentioned: 1