Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s40478-020-0880-6
https://doi.org/10.1186/s40478-020-0880-6
Cited by: 147
Author(s): Osama Al‐Dalahmah, Alexander A. Sosunov, Ayesha Shaik, Kenneth Ofori, Yang Liu, Jean Paul Vonsattel, István Adorján, Vilas Menon, James E. Goldman
Published: about 4 years ago
Software Mentions 14
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq dataPapers that mentioned: 893
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqPapers that mentioned: 60
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in RPapers that mentioned: 79
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.Papers that mentioned: 893
pypi: monocle
An async programming framework with a blocking look-alike syntaxPapers that mentioned: 60