cran: MEGENA | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-67753-5

Quiescent stem cell marker genes in glioma gene networks are sufficient to distinguish between normal and glioblastoma (GBM) samples
Cited by: 13
Author(s): Shradha Mukherjee
Software Mentions: 14
Published: over 4 years ago

10.1186/s40478-020-0880-6

Single-nucleus RNA-seq identifies Huntington disease astrocyte states
Cited by: 147
Author(s): Osama Al‐Dalahmah, Alexander A. Sosunov, Ayesha Shaik, Kenneth Ofori, Yang Liu, Jean Paul Vonsattel, István Adorján, Vilas Menon, James E. Goldman
Software Mentions: 14
Published: almost 5 years ago

10.1016/j.celrep.2020.107908

Meta-Analysis of the Alzheimer’s Disease Human Brain Transcriptome and Functional Dissection in Mouse Models
Cited by: 174
Author(s): Ying-Wooi Wan, Rami Al‐Ouran, Carl Grant Mangleburg, Thanneer M. Perumal, Tom V. Lee, Katherine S. Allison, Vivek Swarup, Cory C. Funk, Chris Gaiteri, Mariet Allen, Minghui Wang, Sarah M. Neuner, Catherine C. Kaczorowski, Vivek Philip, Gareth R. Howell, Heidi Martini‐Stoica, Hui Zheng, Hongkang Mei, Xiaoyan Zhong, Jungwoo Wren Kim, Valina L. Dawson, Ted M. Dawson, Ping‐Chieh Pao, Li‐Huei Tsai, Jean‐Vianney Haure‐Mirande, Michelle E. Ehrlich, Paramita Chakrabarty, Yona Levites, Xue Wang, Eric B. Dammer, Gyan Srivastava, Sumit Mukherjee, Solveig K. Sieberts, Larsson Omberg, Kristen K. Dang, James A. Eddy, Phil Snyder, Yooree Chae, Sandeep Amberkar, Wenbin Wei, Winston Hide, Christoph Preuß, Ayla Ergün, Philip J. Ebert, David Airey, Sara Mostafavi, Lei Yu, Hans‐Ulrich Klein, Gregory W. Carter, David A. Collier, Todd E. Golde, Aĺlan I. Levey, David A. Bennett, Karol Estrada, T. Matthew Townsend, Bin Zhang, Eric E. Schadt, Philip L. De Jager, Nathan D. Price, Nilüfer Ertekin-Taner, Zhandong Liu, Zhandong Liu, Lara M. Mangravite, Benjamin A. Logsdon
Software Mentions: 11
Published: over 4 years ago

10.1186/s12918-016-0349-1

DGCA: A comprehensive R package for Differential Gene Correlation Analysis
Cited by: 156
Author(s): Andrew McKenzie, Igor Katsyv, Won Min Song, Minghui Wang, Bin Zhang
Software Mentions: 9
Published: about 8 years ago

10.1128/mBio.02880-19

Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection
Cited by: 33
Author(s): Changjiang Wang, Christian V. Forst, Tsui-Wen Chou, Adam Geber, Minghui Wang, Wissam Hamou, Melissa Smith, Robert Sebra, Bin Zhang, Bin Zhou, Elodie Ghedin
Software Mentions: 7
Published: over 4 years ago

10.1038/sdata.2018.185

The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer's disease
Cited by: 284
Author(s): Minghui Wang, Noam D. Beckmann, Panos Roussos, Erming Wang, Xianxiao Zhou, Qian Wang, Chi Ming, Ryan Neff, Wanli Ma, John F. Fullard, Mads E. Hauberg, Jaroslav Bendl, Mette A. Peters, Ben Logsdon, Pei Wang, Milind Mahajan, Lara M. Mangravite, Eric B. Dammer, Duc M. Duong, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey, Joseph D. Buxbaum, Michelle E. Ehrlich, Sam Gandy, Pavel Katsel, Vahram Haroutunian, Eric E. Schadt, Bin Zhang
Software Mentions: 6
Published: about 6 years ago

10.1155/2021/6641838

Analysis of Molecular Mechanism of Erxian Decoction in Treating Osteoporosis Based on Formula Optimization Model
Cited by: 22
Author(s): Lang Yang, Liuyi Fan, Kexin Wang, Yu-peng Chen, Liuqin Liang, Xuemei Qin, Aiping Lü, Peng Cao, Bin Yu, Daogang Guan, Junxiang Peng
Software Mentions: 5
Published: over 3 years ago

10.1186/s12918-018-0671-x

Multi-omics integration reveals molecular networks and regulators of psoriasis
Cited by: 35
Author(s): Yuqi Zhao, Deepali Jhamb, Le Shu, Douglas Arneson, Deepak K. Rajpal, Xia Yang
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13293-018-0205-7

Tissue-specific pathways and networks underlying sexual dimorphism in non-alcoholic fatty liver disease
Cited by: 55
Author(s): Zeyneb Kurt, Rio Barrere‐Cain, Jonnby LaGuardia, Margarete Mehrabian, Calvin Pan, Simon T. Hui, Frode Norheim, Zhiqiang Zhou, Yehudit Hasin, Aldons J. Lusis, Xia Yang
Software Mentions: 5
Published: about 6 years ago

10.3390/cells9122566

Comparative Transcriptomics Analyses in Livers of Mice, Humans, and Humanized Mice Define Human-Specific Gene Networks
Cited by: 13
Author(s): Cuiping Jiang, Ping Li, Xiangbo Ruan, Yonghe Ma, Kenji Kawai, Hiroshi Suemizu, Haiming Cao
Software Mentions: 5
Published: almost 4 years ago

10.18632/oncotarget.16417

Interaction of Epstein-Barr virus genes with human gastric carcinoma transcriptome
Cited by: 10
Author(s): Ruiyuan Zhang, Michael J. Strong, Melody Baddoo, Zhen Lin, Yuping Wang, Erik K. Flemington, Yaozhong Liu
Software Mentions: 5
Published: over 7 years ago

10.3390/cancers11050698

NECTIN4 (PVRL4) as Putative Therapeutic Target for a Specific Subtype of High Grade Serous Ovarian Cancer—An Integrative Multi-Omics Approach
Cited by: 25
Author(s): Christine Bekos, Besnik Muqaku, Sabine Dekan, Reinhard Horvat, Stephan Polterauer, Christopher Gerner, Stefanie Aust, Dietmar Pils
Software Mentions: 4
Published: over 5 years ago

10.3390/genes12071101

Unveiling the Pathogenesis of Psychiatric Disorders Using Network Models
Cited by: 7
Author(s): Yanning Zuo, Wei Don, Carissa Zhu, Ormina Naveed, Weizhe Hong, Xia Yang
Software Mentions: 4
Published: over 3 years ago

10.1186/s40635-021-00373-z

Longitudinal multi-omics transition associated with fatality in critically ill COVID-19 patients
Cited by: 8
Author(s): Chaoyang Sun, Yuzhe Sun, Ping Wu, Wencheng Ding, Shiyou Wang, Jiafeng Li, Langchao Liang, Chaochao Chai, Yu Fu, Zhiming Li, Linnan Zhu, Jia Ju, Xin Liao, Xiaoyuan Huang, Feng Li, Ding Ma, Liang He, Dongsheng Chen, Gang Chen, Xin Jin, Peng Wu
Software Mentions: 4
Published: over 3 years ago

10.1186/s40168-020-00803-2

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection
Cited by: 38
Author(s): Lingdi Zhang, Christian V. Forst, Aubree Gordon, Gabrielle Gussin, Adam Geber, Porfirio J. Fernandez, Tao Ding, Lauren Lashua, Minghui Wang, Ángel Balmaseda, Richard Bonneau, Bin Zhang, Elodie Ghedin
Software Mentions: 4
Published: over 4 years ago

10.1186/s12864-021-07643-w

Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria
Cited by: 7
Author(s): Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, S.C. Ring, D.P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh
Software Mentions: 4
Published: over 3 years ago

10.3390/genes10120966

Network Modeling Approaches and Applications to Unravelling Non-Alcoholic Fatty Liver Disease
Cited by: 26
Author(s): Montgomery Blencowe, Tilan Karunanayake, Julian Wier, Neil Hsu, Xia Yang
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13287-020-01613-x

Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women
Cited by: 2
Author(s): Yun Xie, Bin Fang, Wenhui Liu, Guangshuai Li, Ru‐Lin Huang, Lu Zhang, Jiahao He, Shuang-Bai Zhou, Kai Li, Qingfeng Li
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-27293-5

Brain Cell Type Specific Gene Expression and Co-expression Network Architectures
Cited by: 283
Author(s): Andrew McKenzie, Minghui Wang, Mads E. Hauberg, John F. Fullard, Alexey Kozlenkov, Alexandra B. Keenan, Yasmin L. Hurd, Stella Dracheva, Patrizia Casaccia, Panos Roussos, Bin Zhang
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1004574

Multiscale Embedded Gene Co-expression Network Analysis
Cited by: 200
Author(s): Won‐Min Song, Bin Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1186/s12918-018-0531-8

KDiamend: a package for detecting key drivers in a molecular ecological network of disease
Cited by: 4
Author(s): Mengxuan Lyu, Jiaxing Chen, Yiqi Jiang, Wei Dong, Fang Zhou, Shuai Cheng Li
Software Mentions: 2
Published: over 6 years ago

10.1016/j.celrep.2020.107980

Molecular Transducers of Human Skeletal Muscle Remodeling under Different Loading States
Cited by: 29
Author(s): Tanner Stokes, James A. Timmons, Hannah Crossland, Thomas R. Tripp, Karen L. Murphy, Chris McGlory, Cameron J. Mitchell, Sara Y. Oikawa, Robert W. Morton, Bethan E. Phillips, Steven K. Baker, Philip J. Atherton, Claes Wahlestedt, Stuart M. Phillips
Software Mentions: 2
Published: over 4 years ago

10.1002/ijc.32643

Multiscale network analysis reveals molecular mechanisms and key regulators of the tumor microenvironment in gastric cancer
Cited by: 14
Author(s): Won‐Min Song, Xiandong Lin, Xuehong Liao, Dan Hu, Jianhua Lin, Umut Sarpel, Yunbin Ye, Yael Feferman, Daniel M. Labow, Martin J. Walsh, Xiongwei Zheng, Bin Zhang
Software Mentions: 2
Published: about 5 years ago

Ecosyste.ms: Papers

Projects: cran: MEGENA

Papers Mentioning MEGENA 23