Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-021-07643-w

https://doi.org/10.1186/s12864-021-07643-w

Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteria

Cited by: 7
Author(s): Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, S.C. Ring, D.P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh
Published: over 3 years ago

Software Mentions 4

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: DGCA
Differential Gene Correlation Analysis
Papers that mentioned: 17
cran: MEGENA
Multiscale Clustering of Geometrical Network
Papers that mentioned: 23