Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: DGCA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DGCA
Differential Gene Correlation Analysis
3 versions
Latest release: over 1 year ago
315 downloads last month
Papers Mentioning DGCA 17
10.3390/cells8111321
Transcriptional Regulation of Autophagy Genes via Stage-Specific Activation of CEBPB and PPARG during Adipogenesis: A Systematic Study Using Public Gene Expression and Transcription Factor Binding DatasetsCited by: 16
Author(s): Mahmoud Ahmed, Trang Huyen Lai, Jin Seok Hwang, Sahib Zada, Trang Minh Pham, Deok Ryong Kim
Software Mentions: 15
Published: about 5 years ago
10.1186/s40478-020-0880-6
Single-nucleus RNA-seq identifies Huntington disease astrocyte statesCited by: 147
Author(s): Osama Al‐Dalahmah, Alexander A. Sosunov, Ayesha Shaik, Kenneth Ofori, Yang Liu, Jean Paul Vonsattel, István Adorján, Vilas Menon, James E. Goldman
Software Mentions: 14
Published: almost 5 years ago
10.1186/s12918-016-0349-1
DGCA: A comprehensive R package for Differential Gene Correlation AnalysisCited by: 156
Author(s): Andrew McKenzie, Igor Katsyv, Won Min Song, Minghui Wang, Bin Zhang
Software Mentions: 9
Published: about 8 years ago
10.3390/ijms20020263
Molecular Network-Based Drug Prediction in Thyroid CancerCited by: 14
Author(s): Xingyu Xu, Hang Long, Baohang Xi, Binbin Ji, Zejun Li, Yunyue Dang, Cheng Jiang, Yao Yao, Jialiang Yang
Software Mentions: 6
Published: almost 6 years ago
10.1186/s13024-017-0219-3
Multiscale network modeling of oligodendrocytes reveals molecular components of myelin dysregulation in Alzheimer’s diseaseCited by: 92
Author(s): Andrew McKenzie, Sarah Moyon, Minghui Wang, Igor Katsyv, Won Min Song, Xianxiao Zhou, Eric B. Dammer, Duc M. Duong, Joshua D. Aaker, Yang Zhao, Noam D. Beckmann, Pei Wang, Jun Zhu, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey, Pavel Katsel, Vahram Haroutunian, Eric E. Schadt, Brian Popko, Patrizia Casaccia, Bin Zhang
Software Mentions: 6
Published: about 7 years ago
10.1038/s41598-021-82156-w
Cerebrum, liver, and muscle regulatory networks uncover maternal nutrition effects in developmental programming of beef cattle during early pregnancyCited by: 23
Author(s): Wellison J. S. Diniz, Matthew S Crouse, Robert A. Cushman, Kyle J McLean, J. S. Caton, Carl R Dahlen, Lawrence P. Reynolds, Alison K Ward
Software Mentions: 6
Published: almost 4 years ago
10.1155/2020/3451610
A Pipeline to Call Multilevel Expression Changes between Cancer and Normal Tissues and Its Applications in Repurposing Drugs Effective for Gastric CancerCited by: 3
Author(s): Wei Gao, Jun Yang, Changhua Zhuo, Sha Huang, Lin Jia, Guangfeng Wu, Min Zhou
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-021-93845-x
Network and co-expression analysis of airway smooth muscle cell transcriptome delineates potential gene signatures in asthmaCited by: 12
Author(s): Priyanka Banerjee, Premanand Balraj, Nilesh Sudhakar Ambhore, S.A. Wicher, Rodney D. Britt, Christina M. Pabelick, Y. S. Prakash, Venkatachalem Sathish
Software Mentions: 5
Published: over 3 years ago
10.3389/fgene.2021.648898
A Novel Method to Identify the Differences Between Two Single Cell Groups at Single Gene, Gene Pair, and Gene Module LevelsCited by: 1
Author(s): Lingyu Cui, Bo Wang, Caixia Ren, Ailan Wang, Hong An, Wei Liang
Software Mentions: 5
Published: over 3 years ago
10.1186/s12864-021-07643-w
Integrative genomics of the mammalian alveolar macrophage response to intracellular mycobacteriaCited by: 7
Author(s): Thomas J. Hall, Michael P. Mullen, Gillian P. McHugo, Kate E. Killick, S.C. Ring, D.P. Berry, Carolina N. Correia, John A. Browne, Stephen V. Gordon, David E. MacHugh
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2021.735103
Editorial: Computational Tools in Inferring Cancer Tissue-of-Origin and Molecular Classification Towards Personalized Cancer Therapy, Volume IICited by: 0
Author(s): Ling Kui, Wenzhe Mao, Aasim Majeed, Jian Chen
Software Mentions: 4
Published: over 3 years ago
10.1155/2021/9921195
A Computational Framework to Identify Transcriptional and Network Differences between Hepatocellular Carcinoma and Normal Liver Tissue and Their Applications in Repositioning DrugsCited by: 0
Author(s): Aimin Hu, Wei Zheng, Zuxiang Zheng, Bichao Luo, Jieming Yi, Xinhong Zhou, Changjiang Zeng
Software Mentions: 4
Published: about 3 years ago
10.1038/s41598-019-41918-3
Integrating gene regulatory pathways into differential network analysis of gene expression dataCited by: 45
Author(s): Tyler Grimes, S. Steven Potter, Somnath Datta
Software Mentions: 3
Published: over 5 years ago
10.1186/s12885-021-08413-3
Morphologic and molecular correlates of EZH2 as a predictor of platinum resistance in high-grade ovarian serous carcinomaCited by: 5
Author(s): Brett M. Reid, Shraddha Vyas, Zhihua Chen, Ann Chen, Peter A. Kanetsky, Jennifer B. Permuth, Thomas A. Sellers, Ozlen Saglam
Software Mentions: 3
Published: over 3 years ago
10.3390/biomedicines9091263
Pan-Cancer Analysis Reveals Common and Specific Relationships between Intragenic miRNAs and Their Host GenesCited by: 1
Author(s): Baohong Liu, Yu Shyr, Qi Liu
Software Mentions: 3
Published: about 3 years ago
10.1038/s41598-017-17811-2
Transcriptome-wide analysis of natural antisense transcripts shows their potential role in breast cancerCited by: 34
Author(s): Stéphane Wenric, Sonia ElGuendi, Jean‐Hubert Caberg, Warda Bezzaou, Corinne Fasquelle, Benoît Charloteaux, Latifa Karim, Benoît Hennuy, Pierre Frères, Joëlle Collignon, Meriem Boukerroucha, Hélène Schroeder, Fabrice Olivier, Véronique Jossa, Guy Jérusalem, Claire Josse, Vincent Bours
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12885-020-06814-4
Deconvolution of diffuse gastric cancer and the suppression of CD34 on the BALB/c nude mice modelCited by: 68
Author(s): Seon‐Jin Yoon, Jungmin Park, Youngmin Shin, Yuna Choi, Park Sw, Seok‐Gu Kang, Ho‐Young Son, Yong Min Huh
Software Mentions: 1
Published: over 4 years ago