An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1038/s41422-020-00451-z

https://doi.org/10.1038/s41422-020-00451-z

Sequential fate-switches in stem-like cells drive the tumorigenic trajectory from human neural stem cells to malignant glioma

Cited by: 38
Author(s): Xiaofei Wang, Ran Zhou, Yanzhen Xiong, Lingling Zhou, Xiang Yan, Manli Wang, Li Fan, Chuanxing Xie, Yiming Zhang, Zongyao Huang, Chaoqiong Ding, Ke Shi, Weida Li, Liu Yu, Cao Zeyi, Zhenning Zhang, Shengtao Zhou, Chong Chen, Yan Zhang, Lu Chen, Yuan Wang
Published: over 4 years ago

Software Mentions 10

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
Very Likely Science (75)
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
Very Likely Science (90)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: maftools
Summarize, Analyze and Visualize MAF Files
Papers that mentioned: 288
Very Likely Science (100)
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Papers that mentioned: 60
Very Likely Science (100)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: CNVkit
Copy number variation toolkit for high-throughput sequencing.
Papers that mentioned: 161
Very Likely Science (65)
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
Very Likely Science (65)
pypi: monocle
An async programming framework with a blocking look-alike syntax
Papers that mentioned: 60
Very Likely Science (100)