Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fonc.2021.715552

https://doi.org/10.3389/fonc.2021.715552

Cited by: 14
Author(s): Wei Feng, Mingwei He, Xiaohong Jiang, Huijiang Liu, Tianyu Xie, Zhaojie Qin, Qian Huang, Shijie Liao, Chengsen Lin, Jun He, Jiake Xu, Jie Ma, Yun Liu, Qingjun Wei
Published: almost 3 years ago

Software Mentions 6

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: monocle

Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Papers that mentioned: 60

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

pypi: CellPhoneDB

Inferring cell-cell communication.
Papers that mentioned: 89

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: monocle

An async programming framework with a blocking look-alike syntax
Papers that mentioned: 60