Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1007788

https://doi.org/10.1371/journal.pgen.1007788

Single-cell RNA-sequencing reveals transcriptional dynamics of estrogen-induced dysplasia in the ovarian surface epithelium

Cited by: 16
Author(s): Nhung Vuong, David P. Cook, Laura A. Forrest, Lauren E. Carter, Pascale Robineau-Charette, Joshua M. Kofsky, Kendra M. Hodgkinson, Barbara C. Vanderhyden
Published: almost 6 years ago

Software Mentions 6

bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Papers that mentioned: 60
bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
pypi: monocle
An async programming framework with a blocking look-alike syntax
Papers that mentioned: 60