Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-019-1898-6
https://doi.org/10.1186/s13059-019-1898-6
Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 123
Author(s): Shuang Sun, Jiaqiang Zhu, Ying Ma, Xiang Zhou
Published: about 5 years ago
Software Mentions 13
bioconductor: M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeqPapers that mentioned: 21
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-SeqPapers that mentioned: 60
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in RPapers that mentioned: 79
cran: SLICER
Selective Locally Linear Inference of Cellular Expression RelationshipsPapers that mentioned: 26
cran: SOUP
Stochastic Ordering Using Permutations (and Pairwise Comparisons)Papers that mentioned: 6
pypi: monocle
An async programming framework with a blocking look-alike syntaxPapers that mentioned: 60
pypi: scScope
scScope is a deep-learning based approach for single cell RNA-seq analysis.Papers that mentioned: 7