Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1898-6

https://doi.org/10.1186/s13059-019-1898-6

Cited by: 123
Author(s): Shuang Sun, Jiaqiang Zhu, Ying Ma, Xiang Zhou
Published: over 4 years ago

Software Mentions 13

bioconductor: CHETAH
Fast and accurate scRNA-seq cell type identification
Papers that mentioned: 6
bioconductor: M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
Papers that mentioned: 21
bioconductor: monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Papers that mentioned: 60
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: TSCAN
Tools for Single-Cell Analysis
Papers that mentioned: 49
cran: DCA
Dynamic Correlation Analysis for High Dimensional Data
Papers that mentioned: 128
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: SLICER
Selective Locally Linear Inference of Cellular Expression Relationships
Papers that mentioned: 26
cran: SOUP
Stochastic Ordering Using Permutations (and Pairwise Comparisons)
Papers that mentioned: 6
pypi: DCA
Count autoencoder for scRNA-seq denoising
Papers that mentioned: 128
pypi: Isomap
Deriving faces
Papers that mentioned: 115
pypi: monocle
An async programming framework with a blocking look-alike syntax
Papers that mentioned: 60
pypi: scScope
scScope is a deep-learning based approach for single cell RNA-seq analysis.
Papers that mentioned: 7