cran: SLICER | Projects | Ecosyste.ms: Papers

10.3389/fgene.2016.00163

Single-Cell Transcriptomics Bioinformatics and Computational Challenges
Cited by: 101
Author(s): Olivier Poirion, Xun Zhu, Travers Ching, Lana X. Garmire
Software Mentions: 15
Published: almost 8 years ago

10.1186/s13059-019-1898-6

Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 123
Author(s): Shuang Sun, Jiaqiang Zhu, Ying Ma, Xiang Zhou
Software Mentions: 13
Published: almost 5 years ago

10.3389/fgene.2019.00629

Single-Cell RNA Sequencing-Based Computational Analysis to Describe Disease Heterogeneity
Cited by: 23
Author(s): Tao Zeng, Hao Dai
Software Mentions: 10
Published: about 5 years ago

10.1038/s41598-020-80881-2

Comprehensive analysis of metastatic gastric cancer tumour cells using single-cell RNA-seq
Cited by: 24
Author(s): Bin Wang, Yingyi Zhang, Tao Qing, Kaichen Xing, Jie Li, Timing Zhen, Sibo Zhu, Xi Zhan
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pcbi.1007488

Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process
Cited by: 9
Author(s): Jifan Shi, Tiejun Li, Luonan Chen, Kazuyuki Aihara
Software Mentions: 4
Published: almost 5 years ago

10.1093/bioinformatics/btz778

GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution
Cited by: 5
Author(s): Magdalena E Strauß, Paul Kirk, John E. Reid, Lorenz Wernisch
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-017-1647-3

DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data
Cited by: 10
Author(s): Zhuo Wang, Shuilin Jin, Guiyou Liu, Xiurui Zhang, Nan Wang, Deliang Wu, Yang Hu, Chiping Zhang, Qinghua Jiang, Li Xu, Yadong Wang
Software Mentions: 3
Published: over 7 years ago

10.1186/s12859-020-3448-3

Prediction model construction of mouse stem cell pluripotency using CpG and non-CpG DNA methylation markers
Cited by: 3
Author(s): Soobok Joe, Hojung Nam
Software Mentions: 3
Published: over 4 years ago

10.1093/bioinformatics/bty664

GPseudoRank: a permutation sampler for single cell orderings
Cited by: 10
Author(s): Magdalena E Strauß, John E. Reid, Lorenz Wernisch
Software Mentions: 3
Published: about 6 years ago

10.1186/s13059-017-1269-0

MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics
Cited by: 128
Author(s): Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins
Software Mentions: 3
Published: about 7 years ago

10.12688/wellcomeopenres.11087.1

Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzers
Cited by: 23
Author(s): Kieran R Campbell, Christopher Yau
Software Mentions: 2
Published: over 7 years ago

10.1186/s13059-016-0975-3

SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq data
Cited by: 153
Author(s): Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0164193

Effects of TORC1 Inhibition during the Early and Established Phases of Polycystic Kidney Disease
Cited by: 13
Author(s): Michelle H. T. Ta, Kristina G. Schwensen, Sheryl Foster, Mayuresh S. Korgaonkar, Justyna E Ozimek-Kulik, Jacqueline K. Phillips, Anthony Peduto, Gopala K. Rangan
Software Mentions: 1
Published: almost 8 years ago

10.14814/phy2.13828

Assessment of diastolic function and atrial remodeling by MRI - validation and correlation with echocardiography and filling pressure
Cited by: 16
Author(s): Felicia Seemann, Lauren A. Baldassarre, Fiorella Llanos-Chea, Ricardo A. Gonzales, Karl Grunseich, Chenxi Hu, Lissa Sugeng, Judith Meadows, Einar Heiberg, Dana C. Peters
Software Mentions: 1
Published: about 6 years ago

10.1089/neu.2019.6634

Biomechanics of Periventricular Injury
Cited by: 30
Author(s): Zhou Zhou, Xiaogai Li, Svein Kleiven
Software Mentions: 1
Published: over 4 years ago

10.3390/mi10120831

Manufacturing of Al Alloy Microrods by Micro Cutting in a Micromachining Center
Cited by: 6
Author(s): M. Azizur Rahman, M. Rahman, Mozammel Mia, A.B.M.A. Asad, A. Fardin
Software Mentions: 1
Published: almost 5 years ago

10.1002/acm2.12816

A technique to generate synthetic CT from MRI for abdominal radiotherapy
Cited by: 11
Author(s): Shu-Hui Hsu, Pamela DuPre, Qi Peng, Wolfgang A. Tomé
Software Mentions: 1
Published: over 4 years ago

10.1186/s12968-018-0514-3

Prognostic and functional implications of left atrial late gadolinium enhancement cardiovascular magnetic resonance
Cited by: 30
Author(s): Michael A. Quail, Karl Grunseich, Lauren A. Baldassarre, Hamid Mojibian, Mark Marieb, Daniel Cornfeld, Aaron Soufer, Albert J. Sinusas, Dana C. Peters
Software Mentions: 1
Published: over 5 years ago

10.1186/1465-9921-14-42

Paired inspiratory-expiratory chest CT scans to assess for small airways disease in COPD
Cited by: 90
Author(s): Craig P. Hersh, George R. Washko, Raúl San Jośe Estépar, Sharon M. Lutz, Paul J. Friedman, MeiLan K. Han, John E. Hokanson, Philip F. Judy, David A. Lynch, Barry J. Make, Nathaniel Marchetti, John D. Newell, Frank C. Sciurba, James D. Crapo, Edwin K. Silverman
Software Mentions: 1
Published: over 11 years ago

10.1186/1465-9921-15-52

Clinical and computed tomographic predictors of chronic bronchitis in COPD: a cross sectional analysis of the COPDGene study
Cited by: 82
Author(s): Victor Kim, Adam Davey, Alejandro P. Comellas, MeiLan K. Han, George R. Washko, Carlos H. Martínez, David A. Lynch, Jin Hwa Lee, Edwin K. Silverman, James D. Crapo, Barry J. Make, Gerard J. Criner
Software Mentions: 1
Published: over 10 years ago

10.1186/s12931-014-0084-3

Airway wall thickness is increased in COPD patients with bronchodilator responsiveness
Cited by: 36
Author(s): Victor Kim, Parag Desai, John D. Newell, Barry J. Make, George R. Washko, Edwin K. Silverman, James D. Crapo, Surya P. Bhatt, Gerard J. Criner
Software Mentions: 1
Published: about 10 years ago

10.1186/s12931-015-0273-8

Childhood pneumonia increases risk for chronic obstructive pulmonary disease: the COPDGene study
Cited by: 54
Author(s): Lystra P. Hayden, Brian D. Hobbs, Robyn T. Cohen, Robert A. Wise, William Checkley, James D. Crapo, Craig P. Hersh
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2466-14-164

Non-emphysematous chronic obstructive pulmonary disease is associated with diabetes mellitus
Cited by: 52
Author(s): Craig P. Hersh, Barry J. Make, David A. Lynch, R. Graham Barr, Russell P. Bowler, Peter M.A. Calverley, Peter J. Castaldi, Michael H. Cho, Harvey O. Coxson, Dawn L. DeMeo, Marilyn G. Foreman, MeiLan K. Han, Benjamin J. Harshfield, John E. Hokanson, Sharon M. Lutz, Joe Ramsdell, Elizabeth A. Regan, Stephen I. Rennard, Joyce Schroeder, Frank C. Sciurba, Robert M. Steiner, Ruth Tal‐Singer, Edwin Jr van Beek, Edwin K. Silverman, James D. Crapo
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0157164

Optimizing Timing of Immunotherapy Improves Control of Tumors by Hypofractionated Radiation Therapy
Cited by: 227
Author(s): Kristina H. Young, Jason R. Baird, Talicia Savage, Benjamin Cottam, David J. Friedman, Shelly Bambina, David J. Messenheimer, Bernard A. Fox, Pippa Newell, Keith S. Bahjat, Michael Gough, Marka R. Crittenden
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0118658

The Singapore Liver Cancer Recurrence (SLICER) Score for Relapse Prediction in Patients with Surgically Resected Hepatocellular Carcinoma
Cited by: 43
Author(s): Soo Fan Ang, Elizabeth Shu-Hui Ng, Huihua Li, Y. K. Ong, Su Pin Choo, Joanne Ngeow, Han Chong Toh, Kiat Hon Lim, Hao Yun Yap, Chee Kiat Tan, London Lucien Peng Jin Ooi, Alexander Yaw Fui Chung, Pierce K. H. Chow, Kian Fong Foo, Min‐Han Tan, Peng Chung Cheow
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0211117

Blockade of fibroblast activation protein in combination with radiation treatment in murine models of pancreatic adenocarcinoma
Cited by: 49
Author(s): Andrew Gunderson, Tomoko Yamazaki, Kayla McCarty, M. Phillips, Alejandro F. Alice, Shelly Bambina, Lauren Zebertavage, David J. Friedman, Benjamin Cottam, Pippa Newell, Michael Gough, Marka R. Crittenden, Pieter Van der Veken, Kristina H. Young
Software Mentions: 1
Published: over 5 years ago

Ecosyste.ms: Papers

Projects: cran: SLICER

Papers Mentioning SLICER 26