Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: SLICER
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/SLICER
Selective Locally Linear Inference of Cellular Expression
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1 version
Latest release: over 7 years ago
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Papers Mentioning SLICER 26
10.3389/fgene.2016.00163
Single-Cell Transcriptomics Bioinformatics and Computational ChallengesCited by: 101
Author(s): Olivier Poirion, Xun Zhu, Travers Ching, Lana X. Garmire
Software Mentions: 15
Published: about 8 years ago
10.1186/s13059-019-1898-6
Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysisCited by: 123
Author(s): Shuang Sun, Jiaqiang Zhu, Ying Ma, Xiang Zhou
Software Mentions: 13
Published: almost 5 years ago
10.3389/fgene.2019.00629
Single-Cell RNA Sequencing-Based Computational Analysis to Describe Disease HeterogeneityCited by: 23
Author(s): Tao Zeng, Hao Dai
Software Mentions: 10
Published: over 5 years ago
10.1038/s41598-020-80881-2
Comprehensive analysis of metastatic gastric cancer tumour cells using single-cell RNA-seqCited by: 24
Author(s): Bin Wang, Yingyi Zhang, Tao Qing, Kaichen Xing, Jie Li, Timing Zhen, Sibo Zhu, Xi Zhan
Software Mentions: 8
Published: almost 4 years ago
10.1371/journal.pcbi.1007488
Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death processCited by: 9
Author(s): Jifan Shi, Tiejun Li, Luonan Chen, Kazuyuki Aihara
Software Mentions: 4
Published: about 5 years ago
10.1093/bioinformatics/btz778
GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolutionCited by: 5
Author(s): Magdalena E Strauß, Paul Kirk, John E. Reid, Lorenz Wernisch
Software Mentions: 4
Published: about 5 years ago
10.1186/s12859-017-1647-3
DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq dataCited by: 10
Author(s): Zhuo Wang, Shuilin Jin, Guiyou Liu, Xiurui Zhang, Nan Wang, Deliang Wu, Yang Hu, Chiping Zhang, Qinghua Jiang, Li Xu, Yadong Wang
Software Mentions: 3
Published: over 7 years ago
10.1186/s12859-020-3448-3
Prediction model construction of mouse stem cell pluripotency using CpG and non-CpG DNA methylation markersCited by: 3
Author(s): Soobok Joe, Hojung Nam
Software Mentions: 3
Published: over 4 years ago
10.1093/bioinformatics/bty664
GPseudoRank: a permutation sampler for single cell orderingsCited by: 10
Author(s): Magdalena E Strauß, John E. Reid, Lorenz Wernisch
Software Mentions: 3
Published: over 6 years ago
10.1186/s13059-017-1269-0
MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamicsCited by: 128
Author(s): Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins
Software Mentions: 3
Published: over 7 years ago
10.12688/wellcomeopenres.11087.1
Probabilistic modeling of bifurcations in single-cell gene expression data using a Bayesian mixture of factor analyzersCited by: 23
Author(s): Kieran R Campbell, Christopher Yau
Software Mentions: 2
Published: over 7 years ago
10.1186/s13059-016-0975-3
SLICER: inferring branched, nonlinear cellular trajectories from single cell RNA-seq dataCited by: 153
Author(s): Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0164193
Effects of TORC1 Inhibition during the Early and Established Phases of Polycystic Kidney DiseaseCited by: 13
Author(s): Michelle H. T. Ta, Kristina G. Schwensen, Sheryl Foster, Mayuresh S. Korgaonkar, Justyna E Ozimek-Kulik, Jacqueline K. Phillips, Anthony Peduto, Gopala K. Rangan
Software Mentions: 1
Published: about 8 years ago
10.14814/phy2.13828
Assessment of diastolic function and atrial remodeling by MRI - validation and correlation with echocardiography and filling pressureCited by: 16
Author(s): Felicia Seemann, Lauren A. Baldassarre, Fiorella Llanos-Chea, Ricardo A. Gonzales, Karl Grunseich, Chenxi Hu, Lissa Sugeng, Judith Meadows, Einar Heiberg, Dana C. Peters
Software Mentions: 1
Published: about 6 years ago
10.1089/neu.2019.6634
Biomechanics of Periventricular InjuryCited by: 30
Author(s): Zhou Zhou, Xiaogai Li, Svein Kleiven
Software Mentions: 1
Published: over 4 years ago
10.3390/mi10120831
Manufacturing of Al Alloy Microrods by Micro Cutting in a Micromachining CenterCited by: 6
Author(s): M. Azizur Rahman, M. Rahman, Mozammel Mia, A.B.M.A. Asad, A. Fardin
Software Mentions: 1
Published: almost 5 years ago
10.1002/acm2.12816
A technique to generate synthetic CT from MRI for abdominal radiotherapyCited by: 11
Author(s): Shu-Hui Hsu, Pamela DuPre, Qi Peng, Wolfgang A. Tomé
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12968-018-0514-3
Prognostic and functional implications of left atrial late gadolinium enhancement cardiovascular magnetic resonanceCited by: 30
Author(s): Michael A. Quail, Karl Grunseich, Lauren A. Baldassarre, Hamid Mojibian, Mark Marieb, Daniel Cornfeld, Aaron Soufer, Albert J. Sinusas, Dana C. Peters
Software Mentions: 1
Published: almost 6 years ago
10.1186/1465-9921-14-42
Paired inspiratory-expiratory chest CT scans to assess for small airways disease in COPDCited by: 90
Author(s): Craig P. Hersh, George R. Washko, Raúl San Jośe Estépar, Sharon M. Lutz, Paul J. Friedman, MeiLan K. Han, John E. Hokanson, Philip F. Judy, David A. Lynch, Barry J. Make, Nathaniel Marchetti, John D. Newell, Frank C. Sciurba, James D. Crapo, Edwin K. Silverman
Software Mentions: 1
Published: over 11 years ago
10.1186/1465-9921-15-52
Clinical and computed tomographic predictors of chronic bronchitis in COPD: a cross sectional analysis of the COPDGene studyCited by: 82
Author(s): Victor Kim, Adam Davey, Alejandro P. Comellas, MeiLan K. Han, George R. Washko, Carlos H. Martínez, David A. Lynch, Jin Hwa Lee, Edwin K. Silverman, James D. Crapo, Barry J. Make, Gerard J. Criner
Software Mentions: 1
Published: over 10 years ago
10.1186/s12931-014-0084-3
Airway wall thickness is increased in COPD patients with bronchodilator responsivenessCited by: 36
Author(s): Victor Kim, Parag Desai, John D. Newell, Barry J. Make, George R. Washko, Edwin K. Silverman, James D. Crapo, Surya P. Bhatt, Gerard J. Criner
Software Mentions: 1
Published: over 10 years ago
10.1186/s12931-015-0273-8
Childhood pneumonia increases risk for chronic obstructive pulmonary disease: the COPDGene studyCited by: 54
Author(s): Lystra P. Hayden, Brian D. Hobbs, Robyn T. Cohen, Robert A. Wise, William Checkley, James D. Crapo, Craig P. Hersh
Software Mentions: 1
Published: about 9 years ago
10.1186/1471-2466-14-164
Non-emphysematous chronic obstructive pulmonary disease is associated with diabetes mellitusCited by: 52
Author(s): Craig P. Hersh, Barry J. Make, David A. Lynch, R. Graham Barr, Russell P. Bowler, Peter M.A. Calverley, Peter J. Castaldi, Michael H. Cho, Harvey O. Coxson, Dawn L. DeMeo, Marilyn G. Foreman, MeiLan K. Han, Benjamin J. Harshfield, John E. Hokanson, Sharon M. Lutz, Joe Ramsdell, Elizabeth A. Regan, Stephen I. Rennard, Joyce Schroeder, Frank C. Sciurba, Robert M. Steiner, Ruth Tal‐Singer, Edwin Jr van Beek, Edwin K. Silverman, James D. Crapo
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pone.0157164
Optimizing Timing of Immunotherapy Improves Control of Tumors by Hypofractionated Radiation TherapyCited by: 227
Author(s): Kristina H. Young, Jason R. Baird, Talicia Savage, Benjamin Cottam, David J. Friedman, Shelly Bambina, David J. Messenheimer, Bernard A. Fox, Pippa Newell, Keith S. Bahjat, Michael Gough, Marka R. Crittenden
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0118658
The Singapore Liver Cancer Recurrence (SLICER) Score for Relapse Prediction in Patients with Surgically Resected Hepatocellular CarcinomaCited by: 43
Author(s): Soo Fan Ang, Elizabeth Shu-Hui Ng, Huihua Li, Y. K. Ong, Su Pin Choo, Joanne Ngeow, Han Chong Toh, Kiat Hon Lim, Hao Yun Yap, Chee Kiat Tan, London Lucien Peng Jin Ooi, Alexander Yaw Fui Chung, Pierce K. H. Chow, Kian Fong Foo, Min‐Han Tan, Peng Chung Cheow
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0211117
Blockade of fibroblast activation protein in combination with radiation treatment in murine models of pancreatic adenocarcinomaCited by: 49
Author(s): Andrew Gunderson, Tomoko Yamazaki, Kayla McCarty, M. Phillips, Alejandro F. Alice, Shelly Bambina, Lauren Zebertavage, David J. Friedman, Benjamin Cottam, Pippa Newell, Michael Gough, Marka R. Crittenden, Pieter Van der Veken, Kristina H. Young
Software Mentions: 1
Published: almost 6 years ago