Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.3389/fgene.2016.00163
https://doi.org/10.3389/fgene.2016.00163
Cited by: 101
Author(s): Olivier Poirion, Xun Zhu, Travers Ching, Lana X. Garmire
Published: over 7 years ago
Software Mentions 15
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: Oscope
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seqPapers that mentioned: 11
bioconductor: SIMLR
Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)Papers that mentioned: 40
cran: ccRemover
Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing DataPapers that mentioned: 5
cran: COMBAT
A Combined Association Test for Genes using Summary StatisticsPapers that mentioned: 157
cran: SLICER
Selective Locally Linear Inference of Cellular Expression RelationshipsPapers that mentioned: 26
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071
pypi: SIMLR
Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learningPapers that mentioned: 40