Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: Oscope

https://packages.ecosyste.ms/registries/bioconductor.org/packages/Oscope

Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
1 version
Latest release: 10 months ago
1 dependent package
12,262 downloads total

Papers Mentioning Oscope 11

10.3389/fgene.2016.00163

Single-Cell Transcriptomics Bioinformatics and Computational Challenges
Cited by: 101
Author(s): Olivier Poirion, Xun Zhu, Travers Ching, Lana X. Garmire
Software Mentions: 15
Published: almost 8 years ago

10.3389/fgene.2021.655536

Machine Intelligence in Single-Cell Data Analysis: Advances and New Challenges
Cited by: 30
Author(s): Jiajia Li, Zusen Fan, Weiling Zhao, Xiaobo Zhou
Software Mentions: 12
Published: about 3 years ago

10.1186/s13059-016-0927-y

Design and computational analysis of single-cell RNA-sequencing experiments
Cited by: 409
Author(s): Rhonda Bacher, Christina Kendziorski
Software Mentions: 10
Published: over 8 years ago

10.3389/fgene.2019.00629

Single-Cell RNA Sequencing-Based Computational Analysis to Describe Disease Heterogeneity
Cited by: 23
Author(s): Tao Zeng, Hao Dai
Software Mentions: 10
Published: about 5 years ago

10.3389/fcvm.2018.00167

Single Cell Gene Expression to Understand the Dynamic Architecture of the Heart
Cited by: 15
Author(s): Andrea Massaia, Patrícia Chaves, Sara Samari, Ricardo J. Miragaia, Kerstin B. Meyer, Sarah A. Teichmann, Michela Noseda
Software Mentions: 8
Published: over 5 years ago

10.3389/fnins.2018.00031

Exploring the Complexity of Cortical Development Using Single-Cell Transcriptomics
Cited by: 12
Author(s): Hyobin Jeong, Vijay Tiwari
Software Mentions: 8
Published: over 6 years ago

10.7717/peerj.4327

Evidence for widespread dysregulation of circadian clock progression in human cancer
Cited by: 66
Author(s): Jarrod Shilts, Guanhua Chen, Jacob J. Hughey
Software Mentions: 5
Published: over 6 years ago

10.15252/msb.20209946

The transcriptome dynamics of single cells during the cell cycle
Cited by: 28
Author(s): Daniel Schwabe, Sara Formichetti, Jan Philipp Junker, Martin Falcke, Nikolaus Rajewsky
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-020-03561-y

OscoNet: inferring oscillatory gene networks
Cited by: 1
Author(s): Luisa Cutillo, Alexis Boukouvalas, Elli Marinopoulou, Nancy Papalopulu, Magnus Rattray
Software Mentions: 3
Published: almost 4 years ago

10.1093/bioinformatics/btw372

Pseudotime estimation: deconfounding single cell time series
Cited by: 114
Author(s): John E. Reid, Lorenz Wernisch
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pbio.2004050

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress
Cited by: 105
Author(s): Audrey P. Gasch, Feiqiao Brian Yu, James Hose, Leah E. Escalante, Mike Place, Rhonda Bacher, Jad Kanbar, Doina Ciobanu, Laura Sandor, Igor V. Grigoriev, Christina Kendziorski, Stephen R. Quake, Megan N. McClean
Software Mentions: 1
Published: over 6 years ago