Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-016-0927-y

https://doi.org/10.1186/s13059-016-0927-y

Design and computational analysis of single-cell RNA-sequencing experiments

Cited by: 409
Author(s): Rhonda Bacher, Christina Kendziorski
Published: over 8 years ago

Software Mentions 10

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: Oscope
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Papers that mentioned: 11
bioconductor: scDD
Mixture modeling of single-cell RNA-seq data to identify genes with differential distributions
Papers that mentioned: 16
cran: RaceID
Identification of Cell Types, Inference of Lineage Trees, and Prediction of Noise Dynamics from Single-Cell RNA-Seq Data
Papers that mentioned: 25
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668
pypi: scLVM
scLVM
Papers that mentioned: 19