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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: bioconductor: CHETAH

https://packages.ecosyste.ms/registries/bioconductor.org/packages/CHETAH

Fast and accurate scRNA-seq cell type identification
1 version
Latest release: almost 2 years ago
7,647 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: J. K. de Kanter (user)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +6 Science terms in README
    3 scientific terms found in README
  • +6 Academic links
    1 academic links found in README
Penalties:
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning CHETAH 6

10.1186/s13059-019-1898-6
Accuracy, robustness and scalability of dimensionality reduction methods for single-cell RNA-seq analysis
Cited by: 123
Author(s): Shuang Sun, Jiaqiang Zhu, Ying Ma, Xiang Zhou
Software Mentions: 13
Published: over 5 years ago
10.1186/s13059-019-1795-z
A comparison of automatic cell identification methods for single-cell RNA sequencing data
Cited by: 361
Author(s): Tamim Abdelaal, Lieke Michielsen, Davy Cats, Dylan Hoogduin, Hailiang Mei, Marcel J. T. Reinders, Ahmed Mahfouz
Software Mentions: 12
Published: almost 6 years ago
10.1186/s13059-021-02480-2
Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction
Cited by: 16
Author(s): Wenjing Ma, Kenong Su, Hao Wu
Software Mentions: 12
Published: almost 4 years ago
10.15252/msb.20199389
scClassify: sample size estimation and multiscale classification of cells using single and multiple reference
Cited by: 63
Author(s): Yingxin Lin, Yue Cao, Hani Jieun Kim, Agus Salim, T. P. Speed, David M. Lin, Pengyi Yang, Jean Yee Hwa Yang
Software Mentions: 9
Published: about 5 years ago
10.3389/fonc.2021.666829
Taming Cell-to-Cell Heterogeneity in Acute Myeloid Leukaemia With Machine Learning
Cited by: 2
Author(s): Yara E. Sánchez-Corrales, Ruben V.C. Pohle, Sergi Castellano, Alice Giustacchini
Software Mentions: 7
Published: about 4 years ago
10.1371/journal.pone.0243360
DSAVE: Detection of misclassified cells in single-cell RNA-Seq data
Cited by: 2
Author(s): Johan Gustafsson, Jonathan L. Robinson, Juan Salvador Inda-Díaz, Elias Björnson, Rebecka Jörnsten, Jens Nielsen
Software Mentions: 6
Published: over 4 years ago