Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02480-2

https://doi.org/10.1186/s13059-021-02480-2

Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction

Cited by: 16
Author(s): Wenjing Ma, Kenong Su, Hao Wu
Published: over 3 years ago

Software Mentions 12

bioconductor: CHETAH
Fast and accurate scRNA-seq cell type identification
Papers that mentioned: 6
bioconductor: FEAST
FEAture SelcTion (FEAST) for Single-cell clustering
Papers that mentioned: 87
bioconductor: scmap
A tool for unsupervised projection of single cell RNA-seq data
Papers that mentioned: 34
cran: irlba
Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices
Papers that mentioned: 16
cran: SAVER
Single-Cell RNA-Seq Gene Expression Recovery
Papers that mentioned: 40
cran: scSorter
Implementation of 'scSorter' Algorithm
Papers that mentioned: 2
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
pypi: ItClust
An Iterative Transfer learning algorithm for scRNA-seq Clustering
Papers that mentioned: 2
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: scmap
Assigns rgb colors to points on sphere.
Papers that mentioned: 34
pypi: sklearn
deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559