Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: irlba

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/irlba

Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices
14 versions
Latest release: over 1 year ago
69 dependent packages
33,753 downloads last month

Papers Mentioning irlba 16

10.1186/s13059-019-1739-7

CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data
Cited by: 33
Author(s): Rebekka Wegmann, Marilisa Neri, Sven Schuierer, Bilada Bilican, Huyen Hartkopf, Florian Nigsch, Felipa Mapa, Annick Waldt, Rachel Cuttat, Max R. Salick, Joe Raymond, Ajamete Kaykas, Guglielmo Roma, Caroline Gubser Keller
Software Mentions: 13
Published: almost 5 years ago

10.1186/s13059-021-02480-2

Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction
Cited by: 16
Author(s): Wenjing Ma, Kenong Su, Hao Wu
Software Mentions: 12
Published: over 2 years ago

10.1093/bioinformatics/btx392

matter: an R package for rapid prototyping with larger-than-memory datasets on disk
Cited by: 4
Author(s): Kylie A Bemis, Olga Vitek
Software Mentions: 10
Published: almost 7 years ago

10.1186/s13059-019-1662-y

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
Cited by: 518
Author(s): Aaron T. L. Lun, Samantha J. Riesenfeld, Tallulah Andrews, Tomás Gomes, John C. Marioni
Software Mentions: 9
Published: about 5 years ago

10.7554/eLife.41627

Single cell RNA-seq identifies the origins of heterogeneity in efficient cell transdifferentiation and reprogramming
Cited by: 38
Author(s): Mirko Francesconi, Bruno Di Stefano, Clara Berenguer, Luísa de Andrés-Aguayo, Marcos Plana-Carmona, María Méndez-Lago, Amy Guillaumet-Adkins, Gustavo Rodríguez-Esteban, Marta Gut, Holger Heyn, Ben Liu, Thomas Graf
Software Mentions: 7
Published: about 5 years ago

10.3389/fpsyg.2018.01913

The Effect of Moral Congruence of Calls to Action and Salient Social Norms on Online Charitable Donations: A Protocol Study
Cited by: 10
Author(s): Nikola Erceg, Matthias Burghart, Alessia Cottone, Jessica Lorimer, Kiran Manku, Hannah Pütz, Denis Vlašiček, Manou Willems
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-65119-5

Multi-omic signatures identify pan-cancer classes of tumors beyond tissue of origin
Cited by: 17
Author(s): Agustín González-Reymúndez, Ana I. Vázquez
Software Mentions: 5
Published: about 4 years ago

10.1016/j.devcel.2020.11.013

Diverse Routes toward Early Somites in the Mouse Embryo
Cited by: 40
Author(s): Carolina Guibentif, J. B. Griffiths, Iván Imaz-Rosshandler, Shila Ghazanfar, Jennifer Nichols, Valerie Wilson, Berthold Göttgens, John C. Marioni
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-69725-1

Altered mechanisms of genital development identified through integration of DNA methylation and genomic measures in hypospadias
Cited by: 10
Author(s): Melissa A. Richard, Pagna Sok, Stephen Canon, Wendy N. Nembhard, Austin L. Brown, Erin C. Peckham‐Gregory, Minh Ton, Erik A. Ehli, Noah A. Kallsen, Stephen Peyton, Gareth E. Davies, Ashay Patel, Ismael Zamilpa, Charlotte A. Hobbs, Michael E. Scheurer, Philip J. Lupo
Software Mentions: 4
Published: almost 4 years ago

10.3390/genes12091442

Tensor-Decomposition-Based Unsupervised Feature Extraction in Single-Cell Multiomics Data Analysis
Cited by: 6
Author(s): Y-h. Taguchi, Turki Turki
Software Mentions: 3
Published: over 2 years ago

10.1186/s13148-016-0277-3

Intra-individual changes in DNA methylation not mediated by cell-type composition are correlated with aging during childhood
Cited by: 19
Author(s): Kristina Gervin, Bettina Kulle Andreassen, Hanne Sagsveen Hjorthaug, Karin C. Lødrup Carlsen, Dag E. Undlien, Robert Lyle, Monica Cheng Munthe‐Kaas
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-52388-y

Comparison of whole blood and spleen transcriptional signatures over the course of an experimental malaria infection
Cited by: 5
Author(s): Carlos Talavera-López, Yaw Bediako, Jing-wen Lin, John Joseph Valletta, Mario Recker, Jean Langhorne
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0171918

Automated processing of webcam images for phenological classification
Cited by: 7
Author(s): Ludwig Bothmann, Annette Menzel, Bjoern H. Menze, Christian Schunk, Göran Kauermann
Software Mentions: 1
Published: over 7 years ago

10.3389/fncel.2015.00342

Mechanical stress activates neurites and somata of myenteric neurons
Cited by: 28
Author(s): Eva Maria Kugler, Klaus Michel, Florian Zeller, İhsan Ekin Demir, Güralp O. Ceyhan, Michael Schemann, Gemma Mazzuoli‐Weber
Software Mentions: 1
Published: over 8 years ago

10.1007/s00439-019-02014-8

Is population structure in the genetic biobank era irrelevant, a challenge, or an opportunity?
Cited by: 66
Author(s): Daniel J. Lawson, Neil M Davies, Simon Haworth, Bilal Ashraf, Laurence J Howe, Andrew Crawford, Gibran Hemani, George Davey Smith, Nicholas J. Timpson
Software Mentions: 1
Published: about 5 years ago