Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-019-1662-y
https://doi.org/10.1186/s13059-019-1662-y
EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
Cited by: 518
Author(s): Aaron T. L. Lun, Samantha J. Riesenfeld, Tallulah Andrews, Tomás Gomes, John C. Marioni
Published: almost 6 years ago
Software Mentions 9
bioconductor: DropletUtils
Utilities for Handling Single-Cell Droplet DataPapers that mentioned: 14
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in RPapers that mentioned: 79
cran: irlba
Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse MatricesPapers that mentioned: 16
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut ImplementationPapers that mentioned: 255
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting SetsPapers that mentioned: 319