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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-019-1662-y

https://doi.org/10.1186/s13059-019-1662-y

EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data

Cited by: 518
Author(s): Aaron T. L. Lun, Samantha J. Riesenfeld, Tallulah Andrews, Tomás Gomes, John C. Marioni
Published: over 6 years ago

Software Mentions 9

bioconductor: DropletUtils
Utilities for Handling Single-Cell Droplet Data
Papers that mentioned: 14
Very Likely Science (90)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
Very Likely Science (100)
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
Very Likely Science (100)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: irlba
Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices
Papers that mentioned: 16
Very Likely Science (100)
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
Very Likely Science (100)
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
Very Likely Science (100)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)