pypi: sklearn | Projects | Ecosyste.ms: Papers

10.1093/gigascience/giaa026

ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data
Cited by: 13
Author(s): Stephen R. Piccolo, Terry J. Lee, Erica Suh, Kimball T Hill
Software Mentions: 21
Published: over 4 years ago

10.1186/s40168-019-0702-x

Understanding microbial community dynamics to improve optimal microbiome selection
Cited by: 193
Author(s): Robyn J. Wright, Matthew I. Gibson, Joseph Alexander Christie-Oleza
Software Mentions: 18
Published: over 5 years ago

10.1371/journal.pone.0254062

PHOTONAI—A Python API for rapid machine learning model development
Cited by: 8
Author(s): Ramona Leenings, Nils R. Winter, Lucas Plagwitz, Vincent Holstein, Jan Ernsting, Kelvin Sarink, L. Fisch, Jakob Steenweg, Leon Kleine-Vennekate, Julian Gebker, Daniel Emden, Dominik Grotegerd, Nils Opel, Benjamin Risse, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
Software Mentions: 15
Published: over 3 years ago

10.3390/cancers13174348

Histological Grade of Endometrioid Endometrial Cancer and Relapse Risk Can Be Predicted with Machine Learning from Gene Expression Data
Cited by: 4
Author(s): Péter Gargya, Bálint László Bálint
Software Mentions: 14
Published: about 3 years ago

10.1371/journal.pcbi.1007113

Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes
Cited by: 28
Author(s): Claire Bomkamp, Shreejoy J. Tripathy, Carolina Bengtsson Gonzales, Jens Hjerling-Leffler, Ann Marie Craig, Paul Pavlidis
Software Mentions: 13
Published: over 5 years ago

10.1186/s13059-019-1900-3

Benchmarking principal component analysis for large-scale single-cell RNA-sequencing
Cited by: 60
Author(s): Koki Tsuyuzaki, Hiroyuki Sato, K. Sato, Itoshi Nikaido
Software Mentions: 12
Published: almost 5 years ago

10.3389/fimmu.2020.01659

Conventional and Computational Flow Cytometry Analyses Reveal Sustained Human Intrathymic T Cell Development From Birth Until Puberty
Cited by: 2
Author(s): Marieke Lavaert, Brecht Valcke, Bart Vandekerckhove, Georges Leclercq, Kai Ling Liang, Tom Taghon
Software Mentions: 12
Published: over 4 years ago

10.1371/journal.pone.0195065

Dengue forecasting in São Paulo city with generalized additive models, artificial neural networks and seasonal autoregressive integrated moving average models
Cited by: 48
Author(s): Oswaldo Santos Baquero, Lidia Maria Reis Santana, Francisco Chiaravalloti Neto
Software Mentions: 12
Published: over 6 years ago

10.1186/s13059-021-02480-2

Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction
Cited by: 16
Author(s): Wenjing Ma, Kenong Su, Hao Wu
Software Mentions: 12
Published: about 3 years ago

10.3390/nu12020302

The Role of Glycemic Index and Glycemic Load in the Development of Real-Time Postprandial Glycemic Response Prediction Models for Patients with Gestational Diabetes
Cited by: 14
Author(s): Evgenii Pustozerov, Aleksandra Tkachuk, Elena Vasukova, А. В. Дронова, Ekaterina S. Shilova, Anna D. Anopova, Faina Piven, Tatiana Pervunina, Elena Vasilieva, Elena Grineva, Polina Popova
Software Mentions: 11
Published: almost 5 years ago

10.3389/fmicb.2019.01770

Gut Microbiota as an Objective Measurement for Auxiliary Diagnosis of Insomnia Disorder
Cited by: 55
Author(s): Bingdong Liu, Win Lin, Shujie Chen, Ting Xiang, Yifan Yang, Yulong Yin, Guohuan Xu, Zhihong Liu, Li Liu, Jiyang Pan, Liwei Xie
Software Mentions: 11
Published: about 5 years ago

10.3389/fonc.2021.709077

Pyroptosis-Related Gene Signatures Can Robustly Diagnose Skin Cutaneous Melanoma and Predict the Prognosis
Cited by: 57
Author(s): Anji Ju, Jintian Tang, Shuohua Chen, Yan Fu, Yongzhang Luo
Software Mentions: 11
Published: over 3 years ago

10.1186/s13062-018-0214-9

Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach
Cited by: 13
Author(s): Léon-Charles Tranchevent, Petr V. Nazarov, Tony Kaoma, Georges Pierre Schmartz, Arnaud Muller, Sang Yoon Kim, Jagath C. Rajapakse, Francisco Azuaje
Software Mentions: 10
Published: almost 7 years ago

10.3390/md18100515

Applying a Chemogeographic Strategy for Natural Product Discovery from the Marine Cyanobacterium Moorena bouillonii
Cited by: 6
Author(s): Christopher A. Leber, C. Benjamin Naman, Lena Keller, Jehad Almaliti, Eduardo J. E. Caro‐Diaz, Evgenia Glukhov, V. Joseph, Sajeevan Thavarool Puthiyedathu, Andres Joshua Reyes, Jason S. Biggs, Te Li, Ye Yuan, Shan He, Xiaojun Yan, William H. Gerwick
Software Mentions: 10
Published: about 4 years ago

10.1038/s41597-020-00725-6

An annotated dataset of bioacoustic sensing and features of mosquitoes
Cited by: 5
Author(s): Dinarte Vasconcelos, Nuno Nunes, João Gomes
Software Mentions: 10
Published: almost 4 years ago

10.3389/fonc.2021.653863

A Deep-Learning Model With the Attention Mechanism Could Rigorously Predict Survivals in Neuroblastoma
Cited by: 2
Author(s): Chenzhao Feng, Tianyu Xiang, Zixuan Yi, Xinyao Meng, Xufeng Chu, Guiyang Huang, Xiang Zhao, Feng Chen, Bo Xiong, Jiexiong Feng
Software Mentions: 10
Published: over 3 years ago

10.1186/s12859-018-2287-y

miRge 2.0 for comprehensive analysis of microRNA sequencing data
Cited by: 54
Author(s): Yin Lu, Alexander S. Baras, Marc K. Halushka
Software Mentions: 9
Published: over 6 years ago

10.3389/fmed.2021.640515

Performance of Different Diagnostic PD-L1 Clones in Head and Neck Squamous Cell Carcinoma
Cited by: 13
Author(s): Julika Ribbat‐Idel, Frederick A. Dressler, Rosemarie Krupar, Christian Watermann, F. Paulsen, Patrick Kuppler, Luise Klapper, Anne Offermann, Barbara Wollenberg, Dirk Rades, Simon Laban, Markus Reischl, Karl‐Ludwig Bruchhage, Christian Idel, Sven Perner
Software Mentions: 9
Published: over 3 years ago

10.3389/fimmu.2021.680687

Immune2vec: Embedding B/T Cell Receptor Sequences in ℝN Using Natural Language Processing
Cited by: 21
Author(s): Miri Ostrovsky-Berman, Boaz Frankel, Pazit Polak, Gur Yaari
Software Mentions: 9
Published: over 3 years ago

10.1186/s13073-020-00786-7

A cell-of-origin epigenetic tracer reveals clinically distinct subtypes of high-grade serous ovarian cancer
Cited by: 11
Author(s): Pietro Lo Riso, Carlo Emanuele Villa, Gilles Gasparoni, Andrea Vingiani, Raffaele Luongo, Anna Manfredi, Annemarie Jungmann, Alessia Bertolotti, Francesca Borgo, Annalisa Garbi, Michela Lupia, Pasquale Laise, Vivek Das, Giancarlo Pruneri, Giuseppe Viale, Nicoletta Colombo, Teresa Manzo, Luigi Nezi, Ugo Cavallaro, Davide Cacchiarelli, Jörn Walter, Giuseppe Testa
Software Mentions: 9
Published: about 4 years ago

10.1186/s13073-021-00930-x

DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data
Cited by: 72
Author(s): Olivier Poirion, Jiangbin Zheng, Kumardeep Chaudhary, Sijia Huang, Lana X. Garmire
Software Mentions: 9
Published: over 3 years ago

10.1186/s13059-020-02165-2

iMOKA: k-mer based software to analyze large collections of sequencing data
Cited by: 6
Author(s): Claudio Lorenzi, Sylvain Barriere, Jean-Philippe Villemin, Laureline Dejardin Bretones, Alban Mancheron, William Ritchie
Software Mentions: 9
Published: about 4 years ago

10.1186/s12911-021-01459-0

Transformers-sklearn: a toolkit for medical language understanding with transformer-based models
Cited by: 14
Author(s): Feihong Yang, Xuwen Wang, Hetong Ma, Jiao Li
Software Mentions: 9
Published: over 3 years ago

10.3390/jpm10040214

Prediction of Mental Illness in Heart Disease Patients: Association of Comorbidities, Dietary Supplements, and Antibiotics as Risk Factors
Cited by: 3
Author(s): Jayanth Sivakumar, Saba Ahmed, Lina Begdache, Swati Jain, Daehan Won
Software Mentions: 9
Published: almost 4 years ago

10.3389/fneur.2021.713794

Seizure Forecasting Using a Novel Sub-Scalp Ultra-Long Term EEG Monitoring System
Cited by: 35
Author(s): Rachel E Stirling, Matias I. Maturana, Philippa J Karoly, Ewan S. Nurse, Kate McCutcheon, David B. Grayden, Steven G. Ringo, John M. Heasman, R. J. Hoare, Alan Lai, Wendyl D’Souza, Udaya Seneviratne, Linda Seiderer, Karen J. McLean, Kristian J Bulluss, Michael A. Murphy, Benjamin H. Brinkmann, Mark P. Richardson, Dean R. Freestone, Mark Cook
Software Mentions: 9
Published: about 3 years ago

10.1172/jci.insight.141683

CD84 is a regulator of the immunosuppressive microenvironment in Multiple Myeloma
Cited by: 15
Author(s): Hadas Lewinsky, Emine Gulsen Gunes, Keren David, Lihi Radomir, Matthias P. Kramer, Bianca Pellegrino, Michal Perpinial, Jing Chen, Ting He, Anthony G. Mansour, Kun yu Teng, Supriyo Bhattacharya, Enrico Caserta, Estelle Troadec, Peter Lee, Mingye Feng, Jonathan J. Keats, Amrita Krishnan, Michael Rosenzweig, Jianhua Yu, Michael A. Caligiuri, Yosef Cohen, Olga Shevetz, Shirly Becker-Herman, Flavia Pichiorri, Steven T. Rosen, Idit Shachar
Software Mentions: 9
Published: almost 4 years ago

10.3389/fpls.2019.01380

The Development of Hyperspectral Distribution Maps to Predict the Content and Distribution of Nitrogen and Water in Wheat (Triticum aestivum)
Cited by: 52
Author(s): Brooke Bruning, Huajian Liu, Chris Brien, Bettina Berger, Mervyn K. Lewis, Trevor Garnett
Software Mentions: 9
Published: about 5 years ago

10.1126/sciadv.abg1921

Environmental vulnerability of the global ocean epipelagic plankton community interactome
Cited by: 47
Author(s): Samuel Chaffron, Erwan Delage, Marko Budinich, Damien Vintache, Nicolas Henry, Charlotte Nef, Mathieu Ardyna, Ahmed A. Zayed, Pedro C. Junger, Pierre E. Galand, Connie Lovejoy, Alison E. Murray, Hugo Sarmento, Tara Oceans Coordinators, Silvia G. Acinas, Marcel Babin, Daniele Iudicone, Olivier Jaillon, Eric Karsenti, Patrick Wincker, Lee Karp‐Boss, Matthew B. Sullivan, Chris Bowler, Colomban de Vargas, Damien Eveillard
Software Mentions: 9
Published: about 3 years ago

10.1038/s41598-021-81773-9

Verifying explainability of a deep learning tissue classifier trained on RNA-seq data
Cited by: 26
Author(s): Melvyn Yap, Rebecca L. Johnston, Helena Foley, Samual MacDonald, Olga Kondrashova, Khoa Tran, Kátia Nones, Lambros T. Koufariotis, Cameron Bean, John V. Pearson, Maciej Trzaskowski, Nicola Waddell
Software Mentions: 9
Published: almost 4 years ago

10.3390/cancers12123799

A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic Data
Cited by: 11
Author(s): Filippo Valle, Matteo Osella, Michele Caselle
Software Mentions: 8
Published: almost 4 years ago

10.3389/fninf.2014.00014

Machine learning for neuroimaging with scikit-learn
Cited by: 1,186
Author(s): A. Alexandre, Fabián Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Mueller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux
Software Mentions: 8
Published: almost 11 years ago

10.1186/s12859-021-04275-5

VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments
Cited by: 2
Author(s): Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Chi Yang
Software Mentions: 8
Published: over 3 years ago

10.1016/j.patter.2021.100270

ACSNI: An unsupervised machine-learning tool for prediction of tissue-specific pathway components using gene expression profiles
Cited by: 1
Author(s): Chinedu Anthony Anene, Faraz Khan, Findlay Bewicke-Copley, Eleni Maniati, Jun Wang
Software Mentions: 8
Published: over 3 years ago

10.15252/msb.20199071

Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensor
Cited by: 30
Author(s): Francisca Monteiro, Georg Hubmann, Vakil Takhaveev, Silke R. Vedelaar, Justin Norder, Johan Hekelaar, Joana Saldida, Athanasios Litsios, Hein J. Wijma, Alexander Schmidt, Matthias Heinemann
Software Mentions: 8
Published: almost 5 years ago

10.1371/journal.pcbi.1006907

Ten quick tips for effective dimensionality reduction
Cited by: 164
Author(s): Linh P. Nguyen, Susan Holmes
Software Mentions: 8
Published: over 5 years ago

10.1002/ece3.6305

Effects of diet, habitat, and phylogeny on the fecal microbiome of wild African savanna (<i>Loxodonta africana</i>) and forest elephants (<i>L. cyclotis</i>)
Cited by: 16
Author(s): Kris Budd, Joe C. Gunn, Tabitha Finch, Katy E. Klymus, Noah Sitati, Lori S. Eggert
Software Mentions: 8
Published: over 4 years ago

10.1371/journal.pntd.0008755

Combining natural language processing and metabarcoding to reveal pathogen-environment associations
Cited by: 2
Author(s): David Molik, DeAndre Tomlinson, Shane Davitt, Eric Lease Morgan, Matthew Sisk, Benjamin Roche, Natalie Meyers, Michael E. Pfrender
Software Mentions: 8
Published: over 3 years ago

10.3389/fgene.2020.00524

Detecting Prognosis Risk Biomarkers for Colon Cancer Through Multi-Omics-Based Prognostic Analysis and Target Regulation Simulation Modeling
Cited by: 19
Author(s): Zuojing Yin, Xinmiao Yan, Qiming Wang, Zeliang Deng, Kailin Tang, Zhiwei Cao, Tianyi Qiu
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0231824

Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis
Cited by: 0
Author(s): Simone Lederer, Tom Heskes, Simon J. van Heeringen, Cornelis A. Albers
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-017-16050-9

Computational derivation of a molecular framework for hair follicle biology from disease genes
Cited by: 4
Author(s): Rachel K. Severin, Xinwei Li, Kun Qian, Andreas Mueller, Lynn Petukhova
Software Mentions: 7
Published: almost 7 years ago

10.14814/phy2.14880

Animal blood in translational research: How to adjust animal blood viscosity to the human standard
Cited by: 6
Author(s): Paul Ecker, Andreas Sparer, Benjamin Lukitsch, Martin Elenkov, Monika Seltenhammer, Richard Crevenna, Margit Gfoehler, Michael Harasek, Ursula Windberger
Software Mentions: 7
Published: over 3 years ago

10.1186/s12864-021-07711-1

Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thaliana
Cited by: 6
Author(s): Georg Back, Dirk Walther
Software Mentions: 7
Published: over 3 years ago

10.3390/jpm11060582

Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 Diabetes
Cited by: 11
Author(s): Avigail Moldovan, Yedael Y. Waldman, Nadav Brandes, Michal Linial
Software Mentions: 7
Published: over 3 years ago

10.1038/s42003-021-02437-y

Neocortical inhibitory interneuron subtypes are differentially attuned to synchrony- and rate-coded information
Cited by: 3
Author(s): Luke Y. Prince, Matthew M Tran, Dorian Grey, Lydia Saad, Helen Chasiotis, Jeehyun Kwag, Michael Köhl, Blake A Richards
Software Mentions: 7
Published: over 3 years ago

10.1186/s12859-021-03986-z

MSIFinder: a python package for detecting MSI status using random forest classifier
Cited by: 6
Author(s): Tao Zhou, Libin Chen, Jing Guo, Mengmeng Zhang, Yanrui Zhang, Shanbo Cao, Li Feng, Haijun Wang
Software Mentions: 7
Published: over 3 years ago

10.1016/j.csbj.2020.12.012

Virulence factor-related gut microbiota genes and immunoglobulin A levels as novel markers for machine learning-based classification of autism spectrum disorder
Cited by: 17
Author(s): Mingbang Wang, Ceymi Doenyas, Jing Wan, Shujuan Zeng, Chunquan Cai, Jiaxiu Zhou, Yanqing Liu, Yin Zhen, Wenhao Zhou
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-020-78180-x

Personalized quantification of facial normality: a machine learning approach
Cited by: 6
Author(s): Osman Boyaci, Erchin Serpedin, Mitchell A. Stotland
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0240573

Assessment of software methods for estimating protein-protein relative binding affinities
Cited by: 10
Author(s): Tawny R Gonzalez, Kyle Martin, Jonathan E. Barnes, Jagdish Suresh Patel, F. Marty Ytreberg
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-019-43125-6

Predicting protein-ligand interactions based on bow-pharmacological space and Bayesian additive regression trees
Cited by: 33
Author(s): Li Li, Ching Chiek Koh, Daniel Reker, J.B. Brown, Haishuai Wang, Nicholas Keone Lee, Hien-haw Liow, Hao Dai, H. K. Fan, Luonan Chen, Dong‐Qing Wei
Software Mentions: 7
Published: over 5 years ago

10.1021/acsomega.1c00991

Global Property Prediction: A Benchmark Study on Open-Source, Perovskite-like Datasets
Cited by: 5
Author(s): Felix Mayr, Alessio Gagliardi
Software Mentions: 7
Published: over 3 years ago

10.1128/AAC.00504-21

Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance
Cited by: 4
Author(s): Andrej Trauner, Amir Banaei‐Esfahani, Sebastian M. Gygli, Philipp Warmer, Julia Feldmann, Mattia Zampieri, Sònia Borrell, Ben C. Collins, Christian Beisel, Ruedi Aebersold, Sébastien Gagneux
Software Mentions: 6
Published: about 3 years ago

10.7554/eLife.53933

Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivo
Cited by: 33
Author(s): Elizabeth R. Jerison, Stephen R. Quake
Software Mentions: 6
Published: over 4 years ago

10.3390/cells10081942

Kinetics of Anti-SARS-CoV-2 Antibody Responses 3 Months Post Complete Vaccination with BNT162b2; A Prospective Study in 283 Health Workers
Cited by: 37
Author(s): Evangelos Terpos, Ioannis P. Trougakos, Vangelis Karalis, Ioannis Ntanasis‐Stathopoulos, Sentiljana Gumeni, Filia Apostolakou, Aimilia D. Sklirou, Maria Gavriatopoulou, Stamatia Skourti, Efstathios Kastritis, Eleni Korompoki, Ioannis Papassotiriou, Meletios Α. Dimopoulos
Software Mentions: 6
Published: over 3 years ago

10.3389/fninf.2014.00022

SCoT: a Python toolbox for EEG source connectivity
Cited by: 21
Author(s): Martin Billinger, Clemens Brunner, Gernot Müller-Putz
Software Mentions: 6
Published: over 10 years ago

10.3389/fmicb.2020.01528

Microbiome Variation Across Two Hemlock Species With Hemlock Woolly Adelgid Infestation
Cited by: 7
Author(s): Nicholas C. Dove, Timothy J. Rogers, Christy Leppanen, Daniel Simberloff, James A. Fordyce, Veronica A. Brown, Anthony V. LeBude, Thomas G. Ranney, Melissa Cregger
Software Mentions: 6
Published: over 4 years ago

10.3390/molecules26185574

Exploring EZH2-Proteasome Dual-Targeting Drug Discovery through a Computational Strategy to Fight Multiple Myeloma
Cited by: 2
Author(s): Filipe G A Estrada, Silvia Miccoli, Natália Aniceto, Alfonso T. García-Sosa, Rita C. Guedes
Software Mentions: 6
Published: about 3 years ago

10.1186/s12915-021-01086-1

A phenomics approach for antiviral drug discovery
Cited by: 10
Author(s): Jonne Rietdijk, Marianna Tampere, Aleksandra Pettke, Polina Georgiev, Maris Lapins, Ulrika Warpman Berglund, Ola Spjuth, Marjo-Riitta Puumalainen, Jordi Carreras-Puigvert
Software Mentions: 6
Published: over 3 years ago

10.1016/j.ssmph.2020.100687

Application of machine learning to understand child marriage in India
Cited by: 9
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Lotus McDougal, Julian McAuley
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pcbi.1007800

MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
Cited by: 30
Author(s): Avtar Roopra
Software Mentions: 6
Published: over 4 years ago

10.3389/fgene.2020.00238

Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid Arthritis
Cited by: 4
Author(s): Xin Feng, Xubing Hao, Ruoyao Shi, Zhiqiang Xia, Lan Huang, Qiong Yu, Fengfeng Zhou
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pcbi.1005950

HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cells
Cited by: 9
Author(s): Giulio Di Minin, Andreas Postlmayr, Anton Wutz
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0246464

Is it feasible to detect FLOSS version release events from textual messages? A case study on Stack Overflow
Cited by: 0
Author(s): Artur Sokolovsky, Thomas Groß, Jaume Bacardit
Software Mentions: 6
Published: almost 4 years ago

10.3390/ijms22094394

Towards the Interpretability of Machine Learning Predictions for Medical Applications Targeting Personalised Therapies: A Cancer Case Survey
Cited by: 25
Author(s): Antonio Jesús Banegas-Luna, Jorge Peña‐García, Adrian Iftene, Fiorella Guadagni, Patrizia Ferroni, Noemi Scarpato, Fabio Massimo Zanzotto, Andrés Bueno-Crespo, Horacio Pérez‐Sánchez
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-020-03544-z

Uncovering the prognostic gene signatures for the improvement of risk stratification in cancers by using deep learning algorithm coupled with wavelet transform
Cited by: 3
Author(s): Yijia Zhao, Yifan Zhou, Yuan Liu, Yinyi Hao, Menglong Li, Xuemei Pu, Chuan Li, Zhining Wen
Software Mentions: 6
Published: over 4 years ago

10.3390/s20133647

Comparing Person-Specific and Independent Models on Subject-Dependent and Independent Human Activity Recognition Performance
Cited by: 4
Author(s): Sebastian Scheurer, Salvatore Tedesco, Brendan O’Flynn, Kenneth N. Brown
Software Mentions: 6
Published: over 4 years ago

10.3390/s20205947

A Pattern-Recognition-Based Ensemble Data Imputation Framework for Sensors from Building Energy Systems
Cited by: 7
Author(s): Liang Zhang
Software Mentions: 6
Published: about 4 years ago

10.3390/s20133617

Long-Term Evaluation and Calibration of Low-Cost Particulate Matter (PM) Sensor
Cited by: 28
Author(s): Hoochang Lee, Jiseock Kang, Sungjung Kim, Yunseok Im, Seung-Sung Yoo, Dongjun Lee
Software Mentions: 6
Published: over 4 years ago

10.3390/s21062039

Detecting Anomalous Transactions via an IoT Based Application: A Machine Learning Approach for Horse Racing Betting
Cited by: 2
Author(s): Moohong Min, Jemin Justin Lee, Hyunbeom Park, Kyung-Ho Lee
Software Mentions: 6
Published: over 3 years ago

10.3390/diagnostics11040623

Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary Suffix
Cited by: 1
Author(s): Sascha Merat, Theresa Blümlein, Markus Klarhöfer, Dominik Nickel, Gad Singer, Frank G. Zöllner, Stefan O. Schoenberg, Kubik-Huch Ra, Daniel Hausmann, Lukas Hefermehl
Software Mentions: 6
Published: over 3 years ago

10.1016/j.eclinm.2021.101046

Machine learning analysis of non-marital sexual violence in India
Cited by: 2
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Julian McAuley, Lotus McDougal
Software Mentions: 6
Published: about 3 years ago

10.1155/2021/3774607

Automated Amharic News Categorization Using Deep Learning Models
Cited by: 9
Author(s): Demeke Endalie, Getamesay Haile
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pcbi.1007549

BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Cited by: 41
Author(s): Manoj Kumar, Cameron T. Ellis, Qingming Lu, Hejia Zhang, Mihai Capotă, Theodore L. Willke, Peter J. Ramadge, Nicholas B. Turk‐Browne, Kenneth A. Norman
Software Mentions: 6
Published: almost 5 years ago

10.1038/s42003-021-02181-3

Multiparametric biophysical profiling of red blood cells in malaria infection
Cited by: 9
Author(s): Shreya Deshmukh, Bikash Shakya, Anna Chen, Naside Gözde Durmus, Bryan Greenhouse, Elizabeth S. Egan, Utkan Demirci
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-020-65320-6

IRE1α and IGF signaling predict resistance to an endoplasmic reticulum stress-inducing drug in glioblastoma cells
Cited by: 10
Author(s): Jeffrey J. Rodvold, Xian Su, Julia K. Nussbacher, Brian Tsui, Thomas Waller, Stephen Searles, Alyssa Lew, Pengfei Jiang, Ivan Babić, Natsuko Nomura, Jonathan H. Lin, Santosh Kesari, Hannah Carter, Maurizio Zanetti
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2019.01064

Radiomic Nomogram Improves Preoperative T Category Accuracy in Locally Advanced Laryngeal Carcinoma
Cited by: 21
Author(s): Fei Wang, Bin Zhang, Xiangjun Wu, Lizhi Liu, Fang Jin, Justin Chen, Minmin Li, Zhuozhi Chen, Yueyue Li, Di Dong, Jie Tian, Shuixing Zhang
Software Mentions: 6
Published: about 5 years ago

10.1186/s13059-021-02435-7

DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cell
Cited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0257535

Recalibrating expectations about effect size: A multi-method survey of effect sizes in the ABCD study
Cited by: 60
Author(s): Max M. Owens, Alexandra Potter, Courtland S. Hyatt, Matthew D. Albaugh, Wesley K. Thompson, Terry L. Jernigan, Dekang Yuan, Sage Hahn, Nicholas Allgaier, Hugh Garavan
Software Mentions: 6
Published: about 3 years ago

10.1007/s40747-020-00216-6

A novel hand-crafted with deep learning features based fusion model for COVID-19 diagnosis and classification using chest X-ray images
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Author(s): K. Shankar, Eswaran Perumal
Software Mentions: 6
Published: almost 4 years ago

10.3390/s20092546

Mind Wandering in a Multimodal Reading Setting: Behavior Analysis & Automatic Detection Using Eye-Tracking and an EDA Sensor
Cited by: 19
Author(s): Iuliia Brishtel, Anam Ahmad Khan, Thomas Schmidt, Tilman Dingler, Shoya Ishimaru, Andreas Dengel
Software Mentions: 6
Published: over 4 years ago

10.1186/s12896-019-0535-5

VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9
Cited by: 6
Author(s): Laurence O.W. Wilson, Sara Hetzel, Christopher Pockrandt, Knut Reinert, Denis C. Bauer
Software Mentions: 5
Published: over 5 years ago

10.1016/j.stem.2015.04.004

Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations
Cited by: 369
Author(s): Nicola K. Wilson, David G. Kent, Florian Buettner, Mona Shehata, Iain C. Macaulay, Fernando J. Calero-Nieto, Manuel Sánchez Castillo, Caroline A. Oedekoven, Evangelia Diamanti, Reiner Schulte, Chris P. Ponting, Thierry Voet, Carlos Caldas, John Stingl, Anthony Green, Fabian J. Theis, Berthold Göttgens
Software Mentions: 5
Published: over 9 years ago

10.1093/bioinformatics/btz796

Model selection for metabolomics: predicting diagnosis of coronary artery disease using automated machine learning
Cited by: 38
Author(s): Alena Orlenko, Daniel Kofink, Leo-Pekka Lyytikäinen, Kjell Nikus, Pashupati P. Mishra, Pekka Kuukasjärvi, Pekka J. Karhunen, Mika Kähönen, Jari Laurikka, Terho Lehtimäki, Folkert W. Asselbergs, Jason H. Moore
Software Mentions: 5
Published: almost 5 years ago

10.1016/j.celrep.2020.02.093

Biased Connectivity of Brain-wide Inputs to Ventral Subiculum Output Neurons
Cited by: 35
Author(s): Ryan Wee, Andrew F. MacAskill
Software Mentions: 5
Published: over 4 years ago

10.1093/bioinformatics/bty409

PyCoTools: a Python toolbox for COPASI
Cited by: 17
Author(s): Ciaran Welsh, Nicola Fullard, Carole J. Proctor, Alvaro Martinez-Guimera, Robert J. Isfort, Charles C. Bascom, Ryan Tasseff, Stefan Przyborski, Daryl P. Shanley
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-018-2092-7

An interpretable framework for clustering single-cell RNA-Seq datasets
Cited by: 46
Author(s): Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0189159

Transcriptomic profiles in peripheral blood between women with unexplained recurrent implantation failure and recurrent miscarriage and the correlation with endometrium: A pilot study
Cited by: 11
Author(s): Jin Huang, Nana Jin, Hao Qin, Xiao Shi, Yingyu Liu, Wing-Ching Cheung, Chi Chiu Wang, Ting‐Fung Chan, Tin‐Chiu Li
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12964-019-0363-1

Systematic expression analysis of ligand-receptor pairs reveals important cell-to-cell interactions inside glioma
Cited by: 31
Author(s): Dongsheng Yuan, Yiran Tao, Geng Chen, Tieliu Shi
Software Mentions: 5
Published: over 5 years ago

10.1002/advs.201903392

Immune Modulation by Design: Using Topography to Control Human Monocyte Attachment and Macrophage Differentiation
Cited by: 85
Author(s): Matthew Vassey, Grazziela P. Figueredo, David J. Scurr, Aliaksei Vasilevich, Steven Vermeulen, Aurélie Carlier, Jeni Luckett, Nick R. M. Beijer, Paul Williams, David A. Winkler, Jan de Boer, Amir M. Ghaemmaghami, Morgan R. Alexander
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0229502

A background correction method to compensate illumination variation in hyperspectral imaging
Cited by: 6
Author(s): Jonghee Yoon, Alexandru Grigoroiu, Sarah E. Bohndiek
Software Mentions: 5
Published: over 4 years ago

10.1039/d0sc04263c

One class classification as a practical approach for accelerating π–π co-crystal discovery
Cited by: 12
Author(s): Aikaterini Vriza, Angelos B. Canaj, Rebecca Vismara, Laurence J. Kershaw Cook, Troy D. Manning, Michael W. Gaultois, Peter A. Wood, Vitaliy Kurlin, Neil G. Berry, Matthew S. Dyer, Matthew J. Rosseinsky
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-018-35682-z

MSIpred: a python package for tumor microsatellite instability classification from tumor mutation annotation data using a support vector machine
Cited by: 39
Author(s): Chen Wang, Chun Liang
Software Mentions: 5
Published: almost 6 years ago

10.3389/fgene.2021.652623

Construction of Condition-Specific Gene Regulatory Network Using Kernel Canonical Correlation Analysis
Cited by: 2
Author(s): Dabin Jeong, Sangsoo Lim, Sangseon Lee, Minsik Oh, Changyun Cho, Hyeju Seong, Wi Hoon Jung, Sun Kim
Software Mentions: 5
Published: over 3 years ago

10.1186/s13073-019-0679-x

pTuneos: prioritizing tumor neoantigens from next-generation sequencing data
Cited by: 36
Author(s): Chi Zhou, Zhiting Wei, Zhanbing Zhang, Biyu Zhang, Chenyu Zhu, Ke Chen, Guohui Chuai, Sheng Qu, Lu Xie, Yong Gao, Qi Liu
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2019.01091

Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean
Cited by: 71
Author(s): Yang Liu, Duolin Wang, Fei He, Juexin Wang, Trupti Joshi, Dong Xu
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.7362

DeepBindRG: a deep learning based method for estimating effective protein–ligand affinity
Cited by: 61
Author(s): Haiping Zhang, Linbu Liao, Konda Mani Saravanan, Peng Yin, Yanjie Wei
Software Mentions: 5
Published: over 5 years ago

10.1186/s12911-017-0442-4

Development and validation of classifiers and variable subsets for predicting nursing home admission
Cited by: 15
Author(s): Mikko Nuutinen, Riikka‐Leena Leskelä, Ella Suojalehto, Anniina Tirronen, Vesa Komssi
Software Mentions: 5
Published: over 7 years ago

10.3389/fcvm.2021.663509

Development and Validation of a Random Forest Diagnostic Model of Acute Myocardial Infarction Based on Ferroptosis-Related Genes in Circulating Endothelial Cells
Cited by: 14
Author(s): Yifan Chen, Jianfeng Shi, Jun Pu
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.732370

An Integrative Network Science and Artificial Intelligence Drug Repurposing Approach for Muscle Atrophy in Spaceflight Microgravity
Cited by: 2
Author(s): Vidya Manian, Jairo Orozco-Sandoval, Victor Díaz-Martínez
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0188310

Inattention in primary school is not good for your future school achievement—A pattern classification study
Cited by: 8
Author(s): Astri J. Lundervold, Tormod Bøe
Software Mentions: 5
Published: almost 7 years ago

10.3389/fcvm.2021.619386

Low-Density Lipoprotein Cholesterol 4: The Notable Risk Factor of Coronary Artery Disease Development
Cited by: 7
Author(s): Dongmei Wu, Qiuju Yang, Baohua Su, Hao Jia, MA Hui-rong, Weilan Yuan, Junhui Gao, Feifei Ding, Yue Xu, Huifeng Wang, Jiangman Zhao, Bingqiang Li
Software Mentions: 5
Published: over 3 years ago

Projects: pypi: sklearn

Papers Mentioning sklearn 559