Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: sklearn
https://packages.ecosyste.ms/registries/pypi.org/packages/sklearn
deprecated sklearn package, use scikit-learn instead
8 versions
Latest release: about 1 year ago
951 dependent packages
5,053,946 downloads last month
Papers Mentioning sklearn 559
10.1093/gigascience/giaa026
ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular dataCited by: 13
Author(s): Stephen R. Piccolo, Terry J. Lee, Erica Suh, Kimball T Hill
Software Mentions: 21
Published: over 4 years ago
10.1186/s40168-019-0702-x
Understanding microbial community dynamics to improve optimal microbiome selectionCited by: 193
Author(s): Robyn J. Wright, Matthew I. Gibson, Joseph Alexander Christie-Oleza
Software Mentions: 18
Published: over 5 years ago
10.1371/journal.pone.0254062
PHOTONAI—A Python API for rapid machine learning model developmentCited by: 8
Author(s): Ramona Leenings, Nils R. Winter, Lucas Plagwitz, Vincent Holstein, Jan Ernsting, Kelvin Sarink, L. Fisch, Jakob Steenweg, Leon Kleine-Vennekate, Julian Gebker, Daniel Emden, Dominik Grotegerd, Nils Opel, Benjamin Risse, Xiaoyi Jiang, Udo Dannlowski, Tim Hahn
Software Mentions: 15
Published: over 3 years ago
10.3390/cancers13174348
Histological Grade of Endometrioid Endometrial Cancer and Relapse Risk Can Be Predicted with Machine Learning from Gene Expression DataCited by: 4
Author(s): Péter Gargya, Bálint László Bálint
Software Mentions: 14
Published: about 3 years ago
10.1371/journal.pcbi.1007113
Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classesCited by: 28
Author(s): Claire Bomkamp, Shreejoy J. Tripathy, Carolina Bengtsson Gonzales, Jens Hjerling-Leffler, Ann Marie Craig, Paul Pavlidis
Software Mentions: 13
Published: over 5 years ago
10.1186/s13059-019-1900-3
Benchmarking principal component analysis for large-scale single-cell RNA-sequencingCited by: 60
Author(s): Koki Tsuyuzaki, Hiroyuki Sato, K. Sato, Itoshi Nikaido
Software Mentions: 12
Published: almost 5 years ago
10.3389/fimmu.2020.01659
Conventional and Computational Flow Cytometry Analyses Reveal Sustained Human Intrathymic T Cell Development From Birth Until PubertyCited by: 2
Author(s): Marieke Lavaert, Brecht Valcke, Bart Vandekerckhove, Georges Leclercq, Kai Ling Liang, Tom Taghon
Software Mentions: 12
Published: over 4 years ago
10.1371/journal.pone.0195065
Dengue forecasting in São Paulo city with generalized additive models, artificial neural networks and seasonal autoregressive integrated moving average modelsCited by: 48
Author(s): Oswaldo Santos Baquero, Lidia Maria Reis Santana, Francisco Chiaravalloti Neto
Software Mentions: 12
Published: over 6 years ago
10.1186/s13059-021-02480-2
Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference constructionCited by: 16
Author(s): Wenjing Ma, Kenong Su, Hao Wu
Software Mentions: 12
Published: about 3 years ago
10.3390/nu12020302
The Role of Glycemic Index and Glycemic Load in the Development of Real-Time Postprandial Glycemic Response Prediction Models for Patients with Gestational DiabetesCited by: 14
Author(s): Evgenii Pustozerov, Aleksandra Tkachuk, Elena Vasukova, А. В. Дронова, Ekaterina S. Shilova, Anna D. Anopova, Faina Piven, Tatiana Pervunina, Elena Vasilieva, Elena Grineva, Polina Popova
Software Mentions: 11
Published: almost 5 years ago
10.3389/fmicb.2019.01770
Gut Microbiota as an Objective Measurement for Auxiliary Diagnosis of Insomnia DisorderCited by: 55
Author(s): Bingdong Liu, Win Lin, Shujie Chen, Ting Xiang, Yifan Yang, Yulong Yin, Guohuan Xu, Zhihong Liu, Li Liu, Jiyang Pan, Liwei Xie
Software Mentions: 11
Published: over 5 years ago
10.3389/fonc.2021.709077
Pyroptosis-Related Gene Signatures Can Robustly Diagnose Skin Cutaneous Melanoma and Predict the PrognosisCited by: 57
Author(s): Anji Ju, Jintian Tang, Shuohua Chen, Yan Fu, Yongzhang Luo
Software Mentions: 11
Published: over 3 years ago
10.1186/s13062-018-0214-9
Predicting clinical outcome of neuroblastoma patients using an integrative network-based approachCited by: 13
Author(s): Léon-Charles Tranchevent, Petr V. Nazarov, Tony Kaoma, Georges Pierre Schmartz, Arnaud Muller, Sang Yoon Kim, Jagath C. Rajapakse, Francisco Azuaje
Software Mentions: 10
Published: almost 7 years ago
10.3390/md18100515
Applying a Chemogeographic Strategy for Natural Product Discovery from the Marine Cyanobacterium Moorena bouilloniiCited by: 6
Author(s): Christopher A. Leber, C. Benjamin Naman, Lena Keller, Jehad Almaliti, Eduardo J. E. Caro‐Diaz, Evgenia Glukhov, V. Joseph, Sajeevan Thavarool Puthiyedathu, Andres Joshua Reyes, Jason S. Biggs, Te Li, Ye Yuan, Shan He, Xiaojun Yan, William H. Gerwick
Software Mentions: 10
Published: about 4 years ago
10.1038/s41597-020-00725-6
An annotated dataset of bioacoustic sensing and features of mosquitoesCited by: 5
Author(s): Dinarte Vasconcelos, Nuno Nunes, João Gomes
Software Mentions: 10
Published: about 4 years ago
10.3389/fonc.2021.653863
A Deep-Learning Model With the Attention Mechanism Could Rigorously Predict Survivals in NeuroblastomaCited by: 2
Author(s): Chenzhao Feng, Tianyu Xiang, Zixuan Yi, Xinyao Meng, Xufeng Chu, Guiyang Huang, Xiang Zhao, Feng Chen, Bo Xiong, Jiexiong Feng
Software Mentions: 10
Published: over 3 years ago
10.1186/s12859-018-2287-y
miRge 2.0 for comprehensive analysis of microRNA sequencing dataCited by: 54
Author(s): Yin Lu, Alexander S. Baras, Marc K. Halushka
Software Mentions: 9
Published: over 6 years ago
10.3389/fmed.2021.640515
Performance of Different Diagnostic PD-L1 Clones in Head and Neck Squamous Cell CarcinomaCited by: 13
Author(s): Julika Ribbat‐Idel, Frederick A. Dressler, Rosemarie Krupar, Christian Watermann, F. Paulsen, Patrick Kuppler, Luise Klapper, Anne Offermann, Barbara Wollenberg, Dirk Rades, Simon Laban, Markus Reischl, Karl‐Ludwig Bruchhage, Christian Idel, Sven Perner
Software Mentions: 9
Published: over 3 years ago
10.3389/fimmu.2021.680687
Immune2vec: Embedding B/T Cell Receptor Sequences in ℝN Using Natural Language ProcessingCited by: 21
Author(s): Miri Ostrovsky-Berman, Boaz Frankel, Pazit Polak, Gur Yaari
Software Mentions: 9
Published: over 3 years ago
10.1186/s13073-020-00786-7
A cell-of-origin epigenetic tracer reveals clinically distinct subtypes of high-grade serous ovarian cancerCited by: 11
Author(s): Pietro Lo Riso, Carlo Emanuele Villa, Gilles Gasparoni, Andrea Vingiani, Raffaele Luongo, Anna Manfredi, Annemarie Jungmann, Alessia Bertolotti, Francesca Borgo, Annalisa Garbi, Michela Lupia, Pasquale Laise, Vivek Das, Giancarlo Pruneri, Giuseppe Viale, Nicoletta Colombo, Teresa Manzo, Luigi Nezi, Ugo Cavallaro, Davide Cacchiarelli, Jörn Walter, Giuseppe Testa
Software Mentions: 9
Published: about 4 years ago
10.1186/s13073-021-00930-x
DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics dataCited by: 72
Author(s): Olivier Poirion, Jiangbin Zheng, Kumardeep Chaudhary, Sijia Huang, Lana X. Garmire
Software Mentions: 9
Published: over 3 years ago
10.1186/s13059-020-02165-2
iMOKA: k-mer based software to analyze large collections of sequencing dataCited by: 6
Author(s): Claudio Lorenzi, Sylvain Barriere, Jean-Philippe Villemin, Laureline Dejardin Bretones, Alban Mancheron, William Ritchie
Software Mentions: 9
Published: about 4 years ago
10.1186/s12911-021-01459-0
Transformers-sklearn: a toolkit for medical language understanding with transformer-based modelsCited by: 14
Author(s): Feihong Yang, Xuwen Wang, Hetong Ma, Jiao Li
Software Mentions: 9
Published: over 3 years ago
10.3390/jpm10040214
Prediction of Mental Illness in Heart Disease Patients: Association of Comorbidities, Dietary Supplements, and Antibiotics as Risk FactorsCited by: 3
Author(s): Jayanth Sivakumar, Saba Ahmed, Lina Begdache, Swati Jain, Daehan Won
Software Mentions: 9
Published: about 4 years ago
10.3389/fneur.2021.713794
Seizure Forecasting Using a Novel Sub-Scalp Ultra-Long Term EEG Monitoring SystemCited by: 35
Author(s): Rachel E Stirling, Matias I. Maturana, Philippa J Karoly, Ewan S. Nurse, Kate McCutcheon, David B. Grayden, Steven G. Ringo, John M. Heasman, R. J. Hoare, Alan Lai, Wendyl D’Souza, Udaya Seneviratne, Linda Seiderer, Karen J. McLean, Kristian J Bulluss, Michael A. Murphy, Benjamin H. Brinkmann, Mark P. Richardson, Dean R. Freestone, Mark Cook
Software Mentions: 9
Published: about 3 years ago
10.1172/jci.insight.141683
CD84 is a regulator of the immunosuppressive microenvironment in Multiple MyelomaCited by: 15
Author(s): Hadas Lewinsky, Emine Gulsen Gunes, Keren David, Lihi Radomir, Matthias P. Kramer, Bianca Pellegrino, Michal Perpinial, Jing Chen, Ting He, Anthony G. Mansour, Kun yu Teng, Supriyo Bhattacharya, Enrico Caserta, Estelle Troadec, Peter Lee, Mingye Feng, Jonathan J. Keats, Amrita Krishnan, Michael Rosenzweig, Jianhua Yu, Michael A. Caligiuri, Yosef Cohen, Olga Shevetz, Shirly Becker-Herman, Flavia Pichiorri, Steven T. Rosen, Idit Shachar
Software Mentions: 9
Published: almost 4 years ago
10.3389/fpls.2019.01380
The Development of Hyperspectral Distribution Maps to Predict the Content and Distribution of Nitrogen and Water in Wheat (Triticum aestivum)Cited by: 52
Author(s): Brooke Bruning, Huajian Liu, Chris Brien, Bettina Berger, Mervyn K. Lewis, Trevor Garnett
Software Mentions: 9
Published: about 5 years ago
10.1126/sciadv.abg1921
Environmental vulnerability of the global ocean epipelagic plankton community interactomeCited by: 47
Author(s): Samuel Chaffron, Erwan Delage, Marko Budinich, Damien Vintache, Nicolas Henry, Charlotte Nef, Mathieu Ardyna, Ahmed A. Zayed, Pedro C. Junger, Pierre E. Galand, Connie Lovejoy, Alison E. Murray, Hugo Sarmento, Tara Oceans Coordinators, Silvia G. Acinas, Marcel Babin, Daniele Iudicone, Olivier Jaillon, Eric Karsenti, Patrick Wincker, Lee Karp‐Boss, Matthew B. Sullivan, Chris Bowler, Colomban de Vargas, Damien Eveillard
Software Mentions: 9
Published: about 3 years ago
10.1038/s41598-021-81773-9
Verifying explainability of a deep learning tissue classifier trained on RNA-seq dataCited by: 26
Author(s): Melvyn Yap, Rebecca L. Johnston, Helena Foley, Samual MacDonald, Olga Kondrashova, Khoa Tran, Kátia Nones, Lambros T. Koufariotis, Cameron Bean, John V. Pearson, Maciej Trzaskowski, Nicola Waddell
Software Mentions: 9
Published: almost 4 years ago
10.3390/cancers12123799
A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic DataCited by: 11
Author(s): Filippo Valle, Matteo Osella, Michele Caselle
Software Mentions: 8
Published: almost 4 years ago
10.3389/fninf.2014.00014
Machine learning for neuroimaging with scikit-learnCited by: 1,186
Author(s): A. Alexandre, Fabián Pedregosa, Michael Eickenberg, Philippe Gervais, Andreas Mueller, Jean Kossaifi, Alexandre Gramfort, Bertrand Thirion, Gaël Varoquaux
Software Mentions: 8
Published: almost 11 years ago
10.1186/s12859-021-04275-5
VISPR-online: a web-based interactive tool to visualize CRISPR screening experimentsCited by: 2
Author(s): Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Chi Yang
Software Mentions: 8
Published: over 3 years ago
10.1016/j.patter.2021.100270
ACSNI: An unsupervised machine-learning tool for prediction of tissue-specific pathway components using gene expression profilesCited by: 1
Author(s): Chinedu Anthony Anene, Faraz Khan, Findlay Bewicke-Copley, Eleni Maniati, Jun Wang
Software Mentions: 8
Published: over 3 years ago
10.15252/msb.20199071
Measuring glycolytic flux in single yeast cells with an orthogonal synthetic biosensorCited by: 30
Author(s): Francisca Monteiro, Georg Hubmann, Vakil Takhaveev, Silke R. Vedelaar, Justin Norder, Johan Hekelaar, Joana Saldida, Athanasios Litsios, Hein J. Wijma, Alexander Schmidt, Matthias Heinemann
Software Mentions: 8
Published: almost 5 years ago
10.1371/journal.pcbi.1006907
Ten quick tips for effective dimensionality reductionCited by: 164
Author(s): Linh P. Nguyen, Susan Holmes
Software Mentions: 8
Published: over 5 years ago
10.1002/ece3.6305
Effects of diet, habitat, and phylogeny on the fecal microbiome of wild African savanna (<i>Loxodonta africana</i>) and forest elephants (<i>L. cyclotis</i>)Cited by: 16
Author(s): Kris Budd, Joe C. Gunn, Tabitha Finch, Katy E. Klymus, Noah Sitati, Lori S. Eggert
Software Mentions: 8
Published: over 4 years ago
10.1371/journal.pntd.0008755
Combining natural language processing and metabarcoding to reveal pathogen-environment associationsCited by: 2
Author(s): David Molik, DeAndre Tomlinson, Shane Davitt, Eric Lease Morgan, Matthew Sisk, Benjamin Roche, Natalie Meyers, Michael E. Pfrender
Software Mentions: 8
Published: over 3 years ago
10.3389/fgene.2020.00524
Detecting Prognosis Risk Biomarkers for Colon Cancer Through Multi-Omics-Based Prognostic Analysis and Target Regulation Simulation ModelingCited by: 19
Author(s): Zuojing Yin, Xinmiao Yan, Qiming Wang, Zeliang Deng, Kailin Tang, Zhiwei Cao, Tianyi Qiu
Software Mentions: 7
Published: over 4 years ago
10.1371/journal.pone.0231824
Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysisCited by: 0
Author(s): Simone Lederer, Tom Heskes, Simon J. van Heeringen, Cornelis A. Albers
Software Mentions: 7
Published: over 4 years ago
10.1038/s41598-017-16050-9
Computational derivation of a molecular framework for hair follicle biology from disease genesCited by: 4
Author(s): Rachel K. Severin, Xinwei Li, Kun Qian, Andreas Mueller, Lynn Petukhova
Software Mentions: 7
Published: almost 7 years ago
10.14814/phy2.14880
Animal blood in translational research: How to adjust animal blood viscosity to the human standardCited by: 6
Author(s): Paul Ecker, Andreas Sparer, Benjamin Lukitsch, Martin Elenkov, Monika Seltenhammer, Richard Crevenna, Margit Gfoehler, Michael Harasek, Ursula Windberger
Software Mentions: 7
Published: over 3 years ago
10.1186/s12864-021-07711-1
Identification of cis-regulatory motifs in first introns and the prediction of intron-mediated enhancement of gene expression in Arabidopsis thalianaCited by: 6
Author(s): Georg Back, Dirk Walther
Software Mentions: 7
Published: over 3 years ago
10.3390/jpm11060582
Body Mass Index and Birth Weight Improve Polygenic Risk Score for Type 2 DiabetesCited by: 11
Author(s): Avigail Moldovan, Yedael Y. Waldman, Nadav Brandes, Michal Linial
Software Mentions: 7
Published: over 3 years ago
10.1038/s42003-021-02437-y
Neocortical inhibitory interneuron subtypes are differentially attuned to synchrony- and rate-coded informationCited by: 3
Author(s): Luke Y. Prince, Matthew M Tran, Dorian Grey, Lydia Saad, Helen Chasiotis, Jeehyun Kwag, Michael Köhl, Blake A Richards
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-021-03986-z
MSIFinder: a python package for detecting MSI status using random forest classifierCited by: 6
Author(s): Tao Zhou, Libin Chen, Jing Guo, Mengmeng Zhang, Yanrui Zhang, Shanbo Cao, Li Feng, Haijun Wang
Software Mentions: 7
Published: over 3 years ago
10.1016/j.csbj.2020.12.012
Virulence factor-related gut microbiota genes and immunoglobulin A levels as novel markers for machine learning-based classification of autism spectrum disorderCited by: 17
Author(s): Mingbang Wang, Ceymi Doenyas, Jing Wan, Shujuan Zeng, Chunquan Cai, Jiaxiu Zhou, Yanqing Liu, Yin Zhen, Wenhao Zhou
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41598-020-78180-x
Personalized quantification of facial normality: a machine learning approachCited by: 6
Author(s): Osman Boyaci, Erchin Serpedin, Mitchell A. Stotland
Software Mentions: 7
Published: almost 4 years ago
10.1371/journal.pone.0240573
Assessment of software methods for estimating protein-protein relative binding affinitiesCited by: 10
Author(s): Tawny R Gonzalez, Kyle Martin, Jonathan E. Barnes, Jagdish Suresh Patel, F. Marty Ytreberg
Software Mentions: 7
Published: almost 4 years ago
10.1038/s41598-019-43125-6
Predicting protein-ligand interactions based on bow-pharmacological space and Bayesian additive regression treesCited by: 33
Author(s): Li Li, Ching Chiek Koh, Daniel Reker, J.B. Brown, Haishuai Wang, Nicholas Keone Lee, Hien-haw Liow, Hao Dai, H. K. Fan, Luonan Chen, Dong‐Qing Wei
Software Mentions: 7
Published: over 5 years ago
10.1021/acsomega.1c00991
Global Property Prediction: A Benchmark Study on Open-Source, Perovskite-like DatasetsCited by: 5
Author(s): Felix Mayr, Alessio Gagliardi
Software Mentions: 7
Published: over 3 years ago
10.1128/AAC.00504-21
Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic ResistanceCited by: 4
Author(s): Andrej Trauner, Amir Banaei‐Esfahani, Sebastian M. Gygli, Philipp Warmer, Julia Feldmann, Mattia Zampieri, Sònia Borrell, Ben C. Collins, Christian Beisel, Ruedi Aebersold, Sébastien Gagneux
Software Mentions: 6
Published: over 3 years ago
10.7554/eLife.53933
Heterogeneous T cell motility behaviors emerge from a coupling between speed and turning in vivoCited by: 33
Author(s): Elizabeth R. Jerison, Stephen R. Quake
Software Mentions: 6
Published: over 4 years ago
10.3390/cells10081942
Kinetics of Anti-SARS-CoV-2 Antibody Responses 3 Months Post Complete Vaccination with BNT162b2; A Prospective Study in 283 Health WorkersCited by: 37
Author(s): Evangelos Terpos, Ioannis P. Trougakos, Vangelis Karalis, Ioannis Ntanasis‐Stathopoulos, Sentiljana Gumeni, Filia Apostolakou, Aimilia D. Sklirou, Maria Gavriatopoulou, Stamatia Skourti, Efstathios Kastritis, Eleni Korompoki, Ioannis Papassotiriou, Meletios Α. Dimopoulos
Software Mentions: 6
Published: over 3 years ago
10.3389/fninf.2014.00022
SCoT: a Python toolbox for EEG source connectivityCited by: 21
Author(s): Martin Billinger, Clemens Brunner, Gernot Müller-Putz
Software Mentions: 6
Published: over 10 years ago
10.3389/fmicb.2020.01528
Microbiome Variation Across Two Hemlock Species With Hemlock Woolly Adelgid InfestationCited by: 7
Author(s): Nicholas C. Dove, Timothy J. Rogers, Christy Leppanen, Daniel Simberloff, James A. Fordyce, Veronica A. Brown, Anthony V. LeBude, Thomas G. Ranney, Melissa Cregger
Software Mentions: 6
Published: over 4 years ago
10.3390/molecules26185574
Exploring EZH2-Proteasome Dual-Targeting Drug Discovery through a Computational Strategy to Fight Multiple MyelomaCited by: 2
Author(s): Filipe G A Estrada, Silvia Miccoli, Natália Aniceto, Alfonso T. García-Sosa, Rita C. Guedes
Software Mentions: 6
Published: about 3 years ago
10.1186/s12915-021-01086-1
A phenomics approach for antiviral drug discoveryCited by: 10
Author(s): Jonne Rietdijk, Marianna Tampere, Aleksandra Pettke, Polina Georgiev, Maris Lapins, Ulrika Warpman Berglund, Ola Spjuth, Marjo-Riitta Puumalainen, Jordi Carreras-Puigvert
Software Mentions: 6
Published: over 3 years ago
10.1016/j.ssmph.2020.100687
Application of machine learning to understand child marriage in IndiaCited by: 9
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Lotus McDougal, Julian McAuley
Software Mentions: 6
Published: almost 4 years ago
10.1371/journal.pcbi.1007800
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE dataCited by: 30
Author(s): Avtar Roopra
Software Mentions: 6
Published: over 4 years ago
10.3389/fgene.2020.00238
Detection and Comparative Analysis of Methylomic Biomarkers of Rheumatoid ArthritisCited by: 4
Author(s): Xin Feng, Xubing Hao, Ruoyao Shi, Zhiqiang Xia, Lan Huang, Qiong Yu, Fengfeng Zhou
Software Mentions: 6
Published: over 4 years ago
10.1371/journal.pcbi.1005950
HaSAPPy: A tool for candidate identification in pooled forward genetic screens of haploid mammalian cellsCited by: 9
Author(s): Giulio Di Minin, Andreas Postlmayr, Anton Wutz
Software Mentions: 6
Published: almost 7 years ago
10.1371/journal.pone.0246464
Is it feasible to detect FLOSS version release events from textual messages? A case study on Stack OverflowCited by: 0
Author(s): Artur Sokolovsky, Thomas Groß, Jaume Bacardit
Software Mentions: 6
Published: almost 4 years ago
10.3390/ijms22094394
Towards the Interpretability of Machine Learning Predictions for Medical Applications Targeting Personalised Therapies: A Cancer Case SurveyCited by: 25
Author(s): Antonio Jesús Banegas-Luna, Jorge Peña‐García, Adrian Iftene, Fiorella Guadagni, Patrizia Ferroni, Noemi Scarpato, Fabio Massimo Zanzotto, Andrés Bueno-Crespo, Horacio Pérez‐Sánchez
Software Mentions: 6
Published: over 3 years ago
10.1186/s12859-020-03544-z
Uncovering the prognostic gene signatures for the improvement of risk stratification in cancers by using deep learning algorithm coupled with wavelet transformCited by: 3
Author(s): Yijia Zhao, Yifan Zhou, Yuan Liu, Yinyi Hao, Menglong Li, Xuemei Pu, Chuan Li, Zhining Wen
Software Mentions: 6
Published: over 4 years ago
10.3390/s20133647
Comparing Person-Specific and Independent Models on Subject-Dependent and Independent Human Activity Recognition PerformanceCited by: 4
Author(s): Sebastian Scheurer, Salvatore Tedesco, Brendan O’Flynn, Kenneth N. Brown
Software Mentions: 6
Published: over 4 years ago
10.3390/s20205947
A Pattern-Recognition-Based Ensemble Data Imputation Framework for Sensors from Building Energy SystemsCited by: 7
Author(s): Liang Zhang
Software Mentions: 6
Published: about 4 years ago
10.3390/s20133617
Long-Term Evaluation and Calibration of Low-Cost Particulate Matter (PM) SensorCited by: 28
Author(s): Hoochang Lee, Jiseock Kang, Sungjung Kim, Yunseok Im, Seung-Sung Yoo, Dongjun Lee
Software Mentions: 6
Published: over 4 years ago
10.3390/s21062039
Detecting Anomalous Transactions via an IoT Based Application: A Machine Learning Approach for Horse Racing BettingCited by: 2
Author(s): Moohong Min, Jemin Justin Lee, Hyunbeom Park, Kyung-Ho Lee
Software Mentions: 6
Published: over 3 years ago
10.3390/diagnostics11040623
Impact of Chronic Prostatitis on the PI-RADS Score 3: Proposal for the Addition of a Novel Binary SuffixCited by: 1
Author(s): Sascha Merat, Theresa Blümlein, Markus Klarhöfer, Dominik Nickel, Gad Singer, Frank G. Zöllner, Stefan O. Schoenberg, Kubik-Huch Ra, Daniel Hausmann, Lukas Hefermehl
Software Mentions: 6
Published: over 3 years ago
10.1016/j.eclinm.2021.101046
Machine learning analysis of non-marital sexual violence in IndiaCited by: 2
Author(s): Anita Raj, Nabamallika Dehingia, Abhishek Singh, Julian McAuley, Lotus McDougal
Software Mentions: 6
Published: about 3 years ago
10.1155/2021/3774607
Automated Amharic News Categorization Using Deep Learning ModelsCited by: 9
Author(s): Demeke Endalie, Getamesay Haile
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pcbi.1007549
BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysisCited by: 41
Author(s): Manoj Kumar, Cameron T. Ellis, Qingming Lu, Hejia Zhang, Mihai Capotă, Theodore L. Willke, Peter J. Ramadge, Nicholas B. Turk‐Browne, Kenneth A. Norman
Software Mentions: 6
Published: almost 5 years ago
10.1038/s42003-021-02181-3
Multiparametric biophysical profiling of red blood cells in malaria infectionCited by: 9
Author(s): Shreya Deshmukh, Bikash Shakya, Anna Chen, Naside Gözde Durmus, Bryan Greenhouse, Elizabeth S. Egan, Utkan Demirci
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-020-65320-6
IRE1α and IGF signaling predict resistance to an endoplasmic reticulum stress-inducing drug in glioblastoma cellsCited by: 10
Author(s): Jeffrey J. Rodvold, Xian Su, Julia K. Nussbacher, Brian Tsui, Thomas Waller, Stephen Searles, Alyssa Lew, Pengfei Jiang, Ivan Babić, Natsuko Nomura, Jonathan H. Lin, Santosh Kesari, Hannah Carter, Maurizio Zanetti
Software Mentions: 6
Published: over 4 years ago
10.3389/fonc.2019.01064
Radiomic Nomogram Improves Preoperative T Category Accuracy in Locally Advanced Laryngeal CarcinomaCited by: 21
Author(s): Fei Wang, Bin Zhang, Xiangjun Wu, Lizhi Liu, Fang Jin, Justin Chen, Minmin Li, Zhuozhi Chen, Yueyue Li, Di Dong, Jie Tian, Shuixing Zhang
Software Mentions: 6
Published: about 5 years ago
10.1186/s13059-021-02435-7
DeTOKI identifies and characterizes the dynamics of chromatin TAD-like domains in a single cellCited by: 15
Author(s): Xiao Li, Guangjie Zeng, Angsheng Li, Zhihua Zhang
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0257535
Recalibrating expectations about effect size: A multi-method survey of effect sizes in the ABCD studyCited by: 60
Author(s): Max M. Owens, Alexandra Potter, Courtland S. Hyatt, Matthew D. Albaugh, Wesley K. Thompson, Terry L. Jernigan, Dekang Yuan, Sage Hahn, Nicholas Allgaier, Hugh Garavan
Software Mentions: 6
Published: about 3 years ago
10.1007/s40747-020-00216-6
A novel hand-crafted with deep learning features based fusion model for COVID-19 diagnosis and classification using chest X-ray imagesCited by: 60
Author(s): K. Shankar, Eswaran Perumal
Software Mentions: 6
Published: about 4 years ago
10.3390/s20092546
Mind Wandering in a Multimodal Reading Setting: Behavior Analysis & Automatic Detection Using Eye-Tracking and an EDA SensorCited by: 19
Author(s): Iuliia Brishtel, Anam Ahmad Khan, Thomas Schmidt, Tilman Dingler, Shoya Ishimaru, Andreas Dengel
Software Mentions: 6
Published: over 4 years ago
10.1186/s12896-019-0535-5
VARSCOT: variant-aware detection and scoring enables sensitive and personalized off-target detection for CRISPR-Cas9Cited by: 6
Author(s): Laurence O.W. Wilson, Sara Hetzel, Christopher Pockrandt, Knut Reinert, Denis C. Bauer
Software Mentions: 5
Published: over 5 years ago
10.1016/j.stem.2015.04.004
Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell PopulationsCited by: 369
Author(s): Nicola K. Wilson, David G. Kent, Florian Buettner, Mona Shehata, Iain C. Macaulay, Fernando J. Calero-Nieto, Manuel Sánchez Castillo, Caroline A. Oedekoven, Evangelia Diamanti, Reiner Schulte, Chris P. Ponting, Thierry Voet, Carlos Caldas, John Stingl, Anthony Green, Fabian J. Theis, Berthold Göttgens
Software Mentions: 5
Published: over 9 years ago
10.1093/bioinformatics/btz796
Model selection for metabolomics: predicting diagnosis of coronary artery disease using automated machine learningCited by: 38
Author(s): Alena Orlenko, Daniel Kofink, Leo-Pekka Lyytikäinen, Kjell Nikus, Pashupati P. Mishra, Pekka Kuukasjärvi, Pekka J. Karhunen, Mika Kähönen, Jari Laurikka, Terho Lehtimäki, Folkert W. Asselbergs, Jason H. Moore
Software Mentions: 5
Published: about 5 years ago
10.1016/j.celrep.2020.02.093
Biased Connectivity of Brain-wide Inputs to Ventral Subiculum Output NeuronsCited by: 35
Author(s): Ryan Wee, Andrew F. MacAskill
Software Mentions: 5
Published: over 4 years ago
10.1093/bioinformatics/bty409
PyCoTools: a Python toolbox for COPASICited by: 17
Author(s): Ciaran Welsh, Nicola Fullard, Carole J. Proctor, Alvaro Martinez-Guimera, Robert J. Isfort, Charles C. Bascom, Ryan Tasseff, Stefan Przyborski, Daryl P. Shanley
Software Mentions: 5
Published: over 6 years ago
10.1186/s12859-018-2092-7
An interpretable framework for clustering single-cell RNA-Seq datasetsCited by: 46
Author(s): Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0189159
Transcriptomic profiles in peripheral blood between women with unexplained recurrent implantation failure and recurrent miscarriage and the correlation with endometrium: A pilot studyCited by: 11
Author(s): Jin Huang, Nana Jin, Hao Qin, Xiao Shi, Yingyu Liu, Wing-Ching Cheung, Chi Chiu Wang, Ting‐Fung Chan, Tin‐Chiu Li
Software Mentions: 5
Published: almost 7 years ago
10.1186/s12964-019-0363-1
Systematic expression analysis of ligand-receptor pairs reveals important cell-to-cell interactions inside gliomaCited by: 31
Author(s): Dongsheng Yuan, Yiran Tao, Geng Chen, Tieliu Shi
Software Mentions: 5
Published: over 5 years ago
10.1002/advs.201903392
Immune Modulation by Design: Using Topography to Control Human Monocyte Attachment and Macrophage DifferentiationCited by: 85
Author(s): Matthew Vassey, Grazziela P. Figueredo, David J. Scurr, Aliaksei Vasilevich, Steven Vermeulen, Aurélie Carlier, Jeni Luckett, Nick R. M. Beijer, Paul Williams, David A. Winkler, Jan de Boer, Amir M. Ghaemmaghami, Morgan R. Alexander
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0229502
A background correction method to compensate illumination variation in hyperspectral imagingCited by: 6
Author(s): Jonghee Yoon, Alexandru Grigoroiu, Sarah E. Bohndiek
Software Mentions: 5
Published: over 4 years ago
10.1039/d0sc04263c
One class classification as a practical approach for accelerating π–π co-crystal discoveryCited by: 12
Author(s): Aikaterini Vriza, Angelos B. Canaj, Rebecca Vismara, Laurence J. Kershaw Cook, Troy D. Manning, Michael W. Gaultois, Peter A. Wood, Vitaliy Kurlin, Neil G. Berry, Matthew S. Dyer, Matthew J. Rosseinsky
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41598-018-35682-z
MSIpred: a python package for tumor microsatellite instability classification from tumor mutation annotation data using a support vector machineCited by: 39
Author(s): Chen Wang, Chun Liang
Software Mentions: 5
Published: almost 6 years ago
10.3389/fgene.2021.652623
Construction of Condition-Specific Gene Regulatory Network Using Kernel Canonical Correlation AnalysisCited by: 2
Author(s): Dabin Jeong, Sangsoo Lim, Sangseon Lee, Minsik Oh, Changyun Cho, Hyeju Seong, Wi Hoon Jung, Sun Kim
Software Mentions: 5
Published: over 3 years ago
10.1186/s13073-019-0679-x
pTuneos: prioritizing tumor neoantigens from next-generation sequencing dataCited by: 36
Author(s): Chi Zhou, Zhiting Wei, Zhanbing Zhang, Biyu Zhang, Chenyu Zhu, Ke Chen, Guohui Chuai, Sheng Qu, Lu Xie, Yong Gao, Qi Liu
Software Mentions: 5
Published: about 5 years ago
10.3389/fgene.2019.01091
Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of SoybeanCited by: 71
Author(s): Yang Liu, Duolin Wang, Fei He, Juexin Wang, Trupti Joshi, Dong Xu
Software Mentions: 5
Published: almost 5 years ago
10.7717/peerj.7362
DeepBindRG: a deep learning based method for estimating effective protein–ligand affinityCited by: 61
Author(s): Haiping Zhang, Linbu Liao, Konda Mani Saravanan, Peng Yin, Yanjie Wei
Software Mentions: 5
Published: over 5 years ago
10.1186/s12911-017-0442-4
Development and validation of classifiers and variable subsets for predicting nursing home admissionCited by: 15
Author(s): Mikko Nuutinen, Riikka‐Leena Leskelä, Ella Suojalehto, Anniina Tirronen, Vesa Komssi
Software Mentions: 5
Published: over 7 years ago
10.3389/fcvm.2021.663509
Development and Validation of a Random Forest Diagnostic Model of Acute Myocardial Infarction Based on Ferroptosis-Related Genes in Circulating Endothelial CellsCited by: 14
Author(s): Yifan Chen, Jianfeng Shi, Jun Pu
Software Mentions: 5
Published: over 3 years ago
10.3389/fcell.2021.732370
An Integrative Network Science and Artificial Intelligence Drug Repurposing Approach for Muscle Atrophy in Spaceflight MicrogravityCited by: 2
Author(s): Vidya Manian, Jairo Orozco-Sandoval, Victor Díaz-Martínez
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pone.0188310
Inattention in primary school is not good for your future school achievement—A pattern classification studyCited by: 8
Author(s): Astri J. Lundervold, Tormod Bøe
Software Mentions: 5
Published: almost 7 years ago
10.3389/fcvm.2021.619386
Low-Density Lipoprotein Cholesterol 4: The Notable Risk Factor of Coronary Artery Disease DevelopmentCited by: 7
Author(s): Dongmei Wu, Qiuju Yang, Baohua Su, Hao Jia, MA Hui-rong, Weilan Yuan, Junhui Gao, Feifei Ding, Yue Xu, Huifeng Wang, Jiangman Zhao, Bingqiang Li
Software Mentions: 5
Published: over 3 years ago