Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-018-2287-y

https://doi.org/10.1186/s12859-018-2287-y

miRge 2.0 for comprehensive analysis of microRNA sequencing data

Cited by: 54
Author(s): Yin Lu, Alexander S. Baras, Marc K. Halushka
Published: over 6 years ago

Software Mentions 9

pypi: bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
Papers that mentioned: 43
pypi: biopython
Freely available tools for computational molecular biology.
Papers that mentioned: 114
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: build
A simple, correct Python build frontend
Papers that mentioned: 21
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: forgi
RNA Graph Library
Papers that mentioned: 2
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: reportlab
The Reportlab Toolkit
Papers that mentioned: 3
pypi: sklearn
deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559