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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pcbi.1007113

https://doi.org/10.1371/journal.pcbi.1007113

Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes

Cited by: 28
Author(s): Claire Bomkamp, Shreejoy J. Tripathy, Carolina Bengtsson Gonzales, Jens Hjerling-Leffler, Ann Marie Craig, Paul Pavlidis
Published: about 6 years ago

Software Mentions 13

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
bioconductor: mygene
Access MyGene.Info_ services
Papers that mentioned: 19
Very Likely Science (83)
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
Very Likely Science (100)
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
Very Likely Science (100)
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
Very Likely Science (100)
pypi: mygene
Python Client for MyGene.Info services.
Papers that mentioned: 19
Very Likely Science (100)
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
Very Likely Science (100)
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
Very Likely Science (100)
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
Very Likely Science (100)
pypi: seaborn
Statistical data visualization
Papers that mentioned: 283
Very Likely Science (100)
pypi: sklearn
deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559
Very Likely Science (65)
pypi: StandardScaler
Standard scale your data
Papers that mentioned: 48
Very Likely Science (65)
pypi: statsmodels
Statistical computations and models for Python
Papers that mentioned: 277
Very Likely Science (90)