Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1007113

https://doi.org/10.1371/journal.pcbi.1007113

Cited by: 28
Author(s): Claire Bomkamp, Shreejoy J. Tripathy, Carolina Bengtsson Gonzales, Jens Hjerling-Leffler, Ann Marie Craig, Paul Pavlidis
Published: almost 5 years ago

Software Mentions 13

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: mygene

Access MyGene.Info_ services
Papers that mentioned: 19

bioconductor: scran

Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113

cran: lme4

Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267

pypi: matplotlib

Python plotting package
Papers that mentioned: 1,045

pypi: mygene

Python Client for MyGene.Info services.
Papers that mentioned: 19

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: pandas

Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431

pypi: seaborn

Statistical data visualization
Papers that mentioned: 283

pypi: sklearn

deprecated sklearn package, use scikit-learn instead
Papers that mentioned: 559

pypi: StandardScaler

Standard scale your data
Papers that mentioned: 48

pypi: statsmodels

Statistical computations and models for Python
Papers that mentioned: 277