Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: mygene

https://packages.ecosyste.ms/registries/pypi.org/packages/mygene

Python Client for MyGene.Info services.
12 versions
Latest release: over 3 years ago
25 dependent packages
34,870 downloads last month

Papers Mentioning mygene 19

Protocol for Identification and Removal of Doublets with DoubletDecon
Cited by: 7
Author(s): Erica A. K. DePasquale, Daniel Schnell, Kashish Chetal, Nathan Salomonis
Software Mentions: 25
Published: about 4 years ago

10.1371/journal.pcbi.1007113

Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes
Cited by: 28
Author(s): Claire Bomkamp, Shreejoy J. Tripathy, Carolina Bengtsson Gonzales, Jens Hjerling-Leffler, Ann Marie Craig, Paul Pavlidis
Software Mentions: 13
Published: over 5 years ago

10.12688/f1000research.10742.2

haploR: an R package for querying web-based annotation tools
Cited by: 20
Author(s): Ilya Y. Zhbannikov, Konstantin G. Arbeev, Svetlana V. Ukraintseva, Anatoliy I. Yashin
Software Mentions: 13
Published: over 7 years ago

10.12688/f1000research.13925.3

BED: a Biological Entity Dictionary based on a graph data model
Cited by: 1
Author(s): Patrice Godard, Jonathan van Eyll
Software Mentions: 10
Published: over 6 years ago

10.1186/s12859-014-0408-9

Kiwi: a tool for integration and visualization of network topology and gene-set analysis
Cited by: 12
Author(s): Leif Väremo, Francesco Gatto, Jens Nielsen
Software Mentions: 9
Published: almost 10 years ago

10.3390/jcm9082530

Distinctive Tissue and Serum MicroRNA Profile of IgG4-Related Ophthalmic Disease and MALT Lymphoma
Cited by: 5
Author(s): Naoya Nezu, Yoshihiko Usui, Masaki Asakage, Hiroyuki Shimizu, Kinya Tsubota, Akitomo Narimatsu, Kazuhiko Umazume, Naoyuki Yamakawa, Shinya Ohno, Masakatsu Takanashi, Masahiko Kuroda, Hiroshi Gotô
Software Mentions: 8
Published: over 4 years ago

10.3389/fnmol.2020.563091

Isolation and Characterization of Multi-Protein Complexes Enriched in the K-Cl Co-transporter 2 From Brain Plasma Membranes
Cited by: 14
Author(s): Joshua L. Smalley, Georgina Kontou, Catherine Choi, Qiang Ren, David Albrecht, Krithika Abiraman, M. Santos, Christopher E. Bope, Tarek Z. Deeb, Paul Davies, Nicholas J. Brandon, Stephen J. Moss
Software Mentions: 6
Published: about 4 years ago

10.18632/aging.202446

A novel five-lncRNA signature panel improves high-risk survival prediction in patients with cholangiocarcinoma
Cited by: 11
Author(s): Xiaozai Xie, Yi Wang, Sina Zhang, Jialiang Li, Zhengping Yu, Xiwei Ding, Long‐Yun Ye, Peirong Gong, Qing Zhu, Junjian Li, Zi-Yan Chen, Xinfei Yao, Zhifeng Du, Qian Zeng, Hanbin Chen, Zhen Yang, Gang Chen
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12915-020-00940-y

A protocol for adding knowledge to Wikidata: aligning resources on human coronaviruses
Cited by: 14
Author(s): Andra Waagmeester, Egon Willighagen, Andrew I. Su, Martina Kutmon, José Emilio Labra Gayo, Daniel Fernández-Álvarez, Quentin Groom, Peter J. Schaap, Lisa M. Verhagen, Jasper J. Koehorst
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12862-019-1572-3

The transcriptional correlates of divergent electric organ discharges in Paramormyrops electric fish
Cited by: 4
Author(s): Mauricio Losilla, David Luecke, Jason R. Gallant
Software Mentions: 5
Published: almost 5 years ago

10.1038/srep37767

Measuring intratumor heterogeneity by network entropy using RNA-seq data
Cited by: 49
Author(s): Youngjun Park, Sangsoo Lim, Jin Wu Nam, Sun Kim
Software Mentions: 4
Published: almost 8 years ago

10.1038/srep38046

THD-Module Extractor: An Application for CEN Module Extraction and Interesting Gene Identification for Alzheimer’s Disease
Cited by: 10
Author(s): Tulika Kakati, Hirak J. Kashyap, Dhruba K. Bhattacharyya
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-020-74725-2

A recursive framework for predicting the time-course of drug sensitivity
Cited by: 0
Author(s): Qi Cheng, Amin Emad, Nicholas D. Sidiropoulos
Software Mentions: 4
Published: about 4 years ago

10.1186/s13059-016-0953-9

High-performance web services for querying gene and variant annotation
Cited by: 160
Author(s): Jiwen Xin, Adam Mark, Cyrus Afrasiabi, Ginger Tsueng, Moritz Juchler, Nikhil Gopal, Gregory S. Stupp, Tim Putman, Benjamin J. Ainscough, Obi L. Griffith, Ali Torkamani, Patricia L. Whetzel, Christopher J. Mungall, Sean D. Mooney, Andrew I. Su, Chunlei Wu
Software Mentions: 4
Published: over 8 years ago

10.1186/s12859-019-2656-1

Gsslasso Cox: a Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway information
Cited by: 13
Author(s): Zaixiang Tang, Shu‐Feng Lei, Xinyan Zhang, Zixuan Yi, Boyi Guo, Jake Y. Chen, Yueping Shen, Nengjun Yi
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms20071795

Bone Marrow Endothelial Cells Influence Function and Phenotype of Hematopoietic Stem and Progenitor Cells after Mixed Neutron/Gamma Radiation
Cited by: 8
Author(s): Lynnette H. Cary, Daniel Noutai, Rudolph E. Salber, Opeyemi Fadiyimu, Arthur Gross, Graça Almeida-Porada, Kidane Yared, Mark H. Whitnall
Software Mentions: 3
Published: over 5 years ago

10.1534/g3.116.035915

Predictability of Genetic Interactions from Functional Gene Modules
Cited by: 9
Author(s): Jonathan H. Young, Edward M. Marcotte
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12862-019-1371-x

mtProtEvol: the resource presenting molecular evolution analysis of proteins involved in the function of Vertebrate mitochondria
Cited by: 2
Author(s): Anastasia A. Kuzminkova, Anastasia D. Sokol, Kristina Ushakova, Konstantin Popadin, Konstantin Gunbin
Software Mentions: 3
Published: almost 6 years ago

10.12688/f1000research.17927.4

Biobtree: A tool to search and map bioinformatics identifiers and special keywords
Cited by: 2
Author(s): Tamer Gur
Software Mentions: 3
Published: almost 5 years ago