Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.xpro.2020.100085

https://doi.org/10.1016/j.xpro.2020.100085

Protocol for Identification and Removal of Doublets with DoubletDecon

Cited by: 7
Author(s): Erica A. K. DePasquale, Daniel Schnell, Kashish Chetal, Nathan Salomonis
Published: about 4 years ago

Software Mentions 25

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DeconRNASeq
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Papers that mentioned: 23
bioconductor: mygene
Access MyGene.Info_ services
Papers that mentioned: 19
cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: MCL
Markov Cluster Algorithm
Papers that mentioned: 563
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: png
Read and write PNG images
Papers that mentioned: 20
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: R.utils
Various Programming Utilities
Papers that mentioned: 13
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: shinycssloaders
Add Loading Animations to a 'shiny' Output While It's Recalculating
Papers that mentioned: 14
cran: shinyFiles
A Server-Side File System Viewer for Shiny
Papers that mentioned: 4
cran: shinyjs
Easily Improve the User Experience of Your Shiny Apps in Seconds
Papers that mentioned: 15
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
pypi: AltAnalyze
User Friendly Application for Comprehensive Transcriptome Analysis
Papers that mentioned: 102
pypi: devtools
Python's missing debug print command, and more.
Papers that mentioned: 157
pypi: mygene
Python Client for MyGene.Info services.
Papers that mentioned: 19
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127