Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: mygene
https://packages.ecosyste.ms/registries/bioconductor.org/packages/mygene
Access MyGene.Info_ services
1 version
Latest release: about 1 year ago
1 dependent package
53,759 downloads total
Papers Mentioning mygene 19
10.1016/j.xpro.2020.100085
Protocol for Identification and Removal of Doublets with DoubletDeconCited by: 7
Author(s): Erica A. K. DePasquale, Daniel Schnell, Kashish Chetal, Nathan Salomonis
Software Mentions: 25
Published: about 4 years ago
10.1371/journal.pcbi.1007113
Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classesCited by: 28
Author(s): Claire Bomkamp, Shreejoy J. Tripathy, Carolina Bengtsson Gonzales, Jens Hjerling-Leffler, Ann Marie Craig, Paul Pavlidis
Software Mentions: 13
Published: over 5 years ago
10.12688/f1000research.10742.2
haploR: an R package for querying web-based annotation toolsCited by: 20
Author(s): Ilya Y. Zhbannikov, Konstantin G. Arbeev, Svetlana V. Ukraintseva, Anatoliy I. Yashin
Software Mentions: 13
Published: over 7 years ago
10.12688/f1000research.13925.3
BED: a Biological Entity Dictionary based on a graph data modelCited by: 1
Author(s): Patrice Godard, Jonathan van Eyll
Software Mentions: 10
Published: over 6 years ago
10.1186/s12859-014-0408-9
Kiwi: a tool for integration and visualization of network topology and gene-set analysisCited by: 12
Author(s): Leif Väremo, Francesco Gatto, Jens Nielsen
Software Mentions: 9
Published: almost 10 years ago
10.3390/jcm9082530
Distinctive Tissue and Serum MicroRNA Profile of IgG4-Related Ophthalmic Disease and MALT LymphomaCited by: 5
Author(s): Naoya Nezu, Yoshihiko Usui, Masaki Asakage, Hiroyuki Shimizu, Kinya Tsubota, Akitomo Narimatsu, Kazuhiko Umazume, Naoyuki Yamakawa, Shinya Ohno, Masakatsu Takanashi, Masahiko Kuroda, Hiroshi Gotô
Software Mentions: 8
Published: over 4 years ago
10.3389/fnmol.2020.563091
Isolation and Characterization of Multi-Protein Complexes Enriched in the K-Cl Co-transporter 2 From Brain Plasma MembranesCited by: 14
Author(s): Joshua L. Smalley, Georgina Kontou, Catherine Choi, Qiang Ren, David Albrecht, Krithika Abiraman, M. Santos, Christopher E. Bope, Tarek Z. Deeb, Paul Davies, Nicholas J. Brandon, Stephen J. Moss
Software Mentions: 6
Published: about 4 years ago
10.18632/aging.202446
A novel five-lncRNA signature panel improves high-risk survival prediction in patients with cholangiocarcinomaCited by: 11
Author(s): Xiaozai Xie, Yi Wang, Sina Zhang, Jialiang Li, Zhengping Yu, Xiwei Ding, Long‐Yun Ye, Peirong Gong, Qing Zhu, Junjian Li, Zi-Yan Chen, Xinfei Yao, Zhifeng Du, Qian Zeng, Hanbin Chen, Zhen Yang, Gang Chen
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12915-020-00940-y
A protocol for adding knowledge to Wikidata: aligning resources on human coronavirusesCited by: 14
Author(s): Andra Waagmeester, Egon Willighagen, Andrew I. Su, Martina Kutmon, José Emilio Labra Gayo, Daniel Fernández-Álvarez, Quentin Groom, Peter J. Schaap, Lisa M. Verhagen, Jasper J. Koehorst
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12862-019-1572-3
The transcriptional correlates of divergent electric organ discharges in Paramormyrops electric fishCited by: 4
Author(s): Mauricio Losilla, David Luecke, Jason R. Gallant
Software Mentions: 5
Published: almost 5 years ago
10.1038/srep37767
Measuring intratumor heterogeneity by network entropy using RNA-seq dataCited by: 49
Author(s): Youngjun Park, Sangsoo Lim, Jin Wu Nam, Sun Kim
Software Mentions: 4
Published: almost 8 years ago
10.1038/srep38046
THD-Module Extractor: An Application for CEN Module Extraction and Interesting Gene Identification for Alzheimer’s DiseaseCited by: 10
Author(s): Tulika Kakati, Hirak J. Kashyap, Dhruba K. Bhattacharyya
Software Mentions: 4
Published: almost 8 years ago
10.1038/s41598-020-74725-2
A recursive framework for predicting the time-course of drug sensitivityCited by: 0
Author(s): Qi Cheng, Amin Emad, Nicholas D. Sidiropoulos
Software Mentions: 4
Published: about 4 years ago
10.1186/s13059-016-0953-9
High-performance web services for querying gene and variant annotationCited by: 160
Author(s): Jiwen Xin, Adam Mark, Cyrus Afrasiabi, Ginger Tsueng, Moritz Juchler, Nikhil Gopal, Gregory S. Stupp, Tim Putman, Benjamin J. Ainscough, Obi L. Griffith, Ali Torkamani, Patricia L. Whetzel, Christopher J. Mungall, Sean D. Mooney, Andrew I. Su, Chunlei Wu
Software Mentions: 4
Published: over 8 years ago
10.1186/s12859-019-2656-1
Gsslasso Cox: a Bayesian hierarchical model for predicting survival and detecting associated genes by incorporating pathway informationCited by: 13
Author(s): Zaixiang Tang, Shu‐Feng Lei, Xinyan Zhang, Zixuan Yi, Boyi Guo, Jake Y. Chen, Yueping Shen, Nengjun Yi
Software Mentions: 4
Published: over 5 years ago
10.3390/ijms20071795
Bone Marrow Endothelial Cells Influence Function and Phenotype of Hematopoietic Stem and Progenitor Cells after Mixed Neutron/Gamma RadiationCited by: 8
Author(s): Lynnette H. Cary, Daniel Noutai, Rudolph E. Salber, Opeyemi Fadiyimu, Arthur Gross, Graça Almeida-Porada, Kidane Yared, Mark H. Whitnall
Software Mentions: 3
Published: over 5 years ago
10.1534/g3.116.035915
Predictability of Genetic Interactions from Functional Gene ModulesCited by: 9
Author(s): Jonathan H. Young, Edward M. Marcotte
Software Mentions: 3
Published: almost 8 years ago
10.1186/s12862-019-1371-x
mtProtEvol: the resource presenting molecular evolution analysis of proteins involved in the function of Vertebrate mitochondriaCited by: 2
Author(s): Anastasia A. Kuzminkova, Anastasia D. Sokol, Kristina Ushakova, Konstantin Popadin, Konstantin Gunbin
Software Mentions: 3
Published: almost 6 years ago
10.12688/f1000research.17927.4
Biobtree: A tool to search and map bioinformatics identifiers and special keywordsCited by: 2
Author(s): Tamer Gur
Software Mentions: 3
Published: almost 5 years ago