Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.13925.3

https://doi.org/10.12688/f1000research.13925.3

BED: a Biological Entity Dictionary based on a graph data model

Cited by: 1
Author(s): Patrice Godard, Jonathan van Eyll
Published: over 6 years ago

Software Mentions 10

bioconductor: biomaRt

Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446

bioconductor: GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328

bioconductor: mygene

Access MyGene.Info_ services
Papers that mentioned: 19

cran: BED

Biological Entity Dictionary (BED)
Papers that mentioned: 49

cran: dplyr

A Grammar of Data Manipulation
Papers that mentioned: 1,213

cran: gProfileR

Interface to the 'g:Profiler' Toolkit
Papers that mentioned: 56

cran: miniUI

Shiny UI Widgets for Small Screens
Papers that mentioned: 5

cran: neo2R

Neo4j to R
Papers that mentioned: 1

cran: visNetwork

Network Visualization using 'vis.js' Library
Papers that mentioned: 49

pypi: mygene

Python Client for MyGene.Info services.
Papers that mentioned: 19