pypi: statsmodels | Projects | Ecosyste.ms: Papers

10.3389/fninf.2013.00052

A framework for streamlining research workflow in neuroscience and psychology
Cited by: 12
Author(s): Jonas Kubilius
Software Mentions: 25
Published: almost 11 years ago

Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study
Cited by: 49
Author(s): Marco Galardini, Olivier Clermont, Agnès Baron, Bede P. Busby, Sara Dion, Sören Schubert, Pedro Beltrão, Erick Denamur
Software Mentions: 20
Published: about 4 years ago

10.1016/j.cub.2020.12.047

A sex-specific switch between visual and olfactory inputs underlies adaptive sex differences in behavior
Cited by: 32
Author(s): Tetsuya Nojima, Annika Rings, Annette D. Allen, Nils Otto, Thomas A. Verschut, Jean‐Christophe Billeter, Megan C Neville, Stephen F. Goodwin
Software Mentions: 19
Published: almost 4 years ago

10.1186/s13059-021-02264-8

GeneWalk identifies relevant gene functions for a biological context using network representation learning
Cited by: 26
Author(s): Robert Ietswaart, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger, L. Stirling Churchman
Software Mentions: 14
Published: almost 4 years ago

10.15252/msb.20209498

Developmental function and state transitions of a gene expression oscillator in Caenorhabditis elegans
Cited by: 43
Author(s): Milou W.M. Meeuse, Yannick P Hauser, Lucas J Morales Moya, Gert‐Jan Hendriks, Jan Eglinger, Guy Bogaarts, Charisios D. Tsiairis, Helge Großhans
Software Mentions: 14
Published: over 4 years ago

10.1371/journal.pcbi.1007113

Transcriptomic correlates of electrophysiological and morphological diversity within and across excitatory and inhibitory neuron classes
Cited by: 28
Author(s): Claire Bomkamp, Shreejoy J. Tripathy, Carolina Bengtsson Gonzales, Jens Hjerling-Leffler, Ann Marie Craig, Paul Pavlidis
Software Mentions: 13
Published: over 5 years ago

10.3389/fimmu.2020.00444

JunB Controls Intestinal Effector Programs in Regulatory T Cells
Cited by: 8
Author(s): Joshua D. Wheaton, Maria Ciofani
Software Mentions: 12
Published: over 4 years ago

10.7554/eLife.60474

The effect of hybridization on transposable element accumulation in an undomesticated fungal species
Cited by: 26
Author(s): Mathieu Hénault, Souhir Marsit, Guillaume Charron, Christian R. Landry
Software Mentions: 12
Published: about 4 years ago

10.1038/s42003-021-01941-5

CENP-A overexpression promotes distinct fates in human cells, depending on p53 status
Cited by: 23
Author(s): Daniel Jeffery, Alberto Gatto, Katrina Podsypanina, Charlène Renaud-Pageot, Rebeca Ponce Landete, Lorraine Bonneville, Marie Dumont, Daniele Fachinetti, Geneviève Almouzni
Software Mentions: 12
Published: over 3 years ago

10.1038/s41598-018-31154-6

Instant Clue: A Software Suite for Interactive Data Visualization and Analysis
Cited by: 156
Author(s): Hendrik Nolte, Thomas MacVicar, Frederik Tellkamp, Marcus Krüger
Software Mentions: 11
Published: over 6 years ago

10.3390/jcm9082591

Risk of Adverse Drug Events Following the Virtual Addition of COVID-19 Repurposed Drugs to Drug Regimens of Frail Older Adults with Polypharmacy
Cited by: 14
Author(s): Sweilem B. Al Rihani, Matt K. Smith, Ravil Bikmetov, Malavika Deodhar, Pamela Dow, Jacques Turgeon, Véronique Michaud
Software Mentions: 11
Published: over 4 years ago

10.3389/fnins.2019.00494

Automated, Efficient, and Accelerated Knowledge Modeling of the Cognitive Neuroimaging Literature Using the ATHENA Toolkit
Cited by: 6
Author(s): Michael C. Riedel, Taylor Salo, Jason Hays, Matthew D. Turner, Matthew T. Sutherland, Jessica A. Turner, Angela R. Laird
Software Mentions: 10
Published: over 5 years ago

10.7554/eLife.67490

Non-linear dimensionality reduction on extracellular waveforms reveals cell type diversity in premotor cortex
Cited by: 27
Author(s): Eric Lee, Hymavathy Balasubramanian, Alexandra Tsolias, Stephanie Udochukwu Anakwe, Maria Medalla, Krishna V. Shenoy, Chandramouli Chandrasekaran
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-020-80308-y

A novel retinal ganglion cell quantification tool based on deep learning
Cited by: 22
Author(s): Luca Masin, Marie Claes, Steven Bergmans, Lien Cools, Lien Andries, Benjamin Davis, Lieve Moons, Lies De Groef
Software Mentions: 10
Published: almost 4 years ago

10.1186/s13073-021-00930-x

DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data
Cited by: 72
Author(s): Olivier Poirion, Jiangbin Zheng, Kumardeep Chaudhary, Sijia Huang, Lana X. Garmire
Software Mentions: 9
Published: over 3 years ago

10.3390/jpm10040214

Prediction of Mental Illness in Heart Disease Patients: Association of Comorbidities, Dietary Supplements, and Antibiotics as Risk Factors
Cited by: 3
Author(s): Jayanth Sivakumar, Saba Ahmed, Lina Begdache, Swati Jain, Daehan Won
Software Mentions: 9
Published: about 4 years ago

10.3389/fcimb.2020.00137

Microbiotyping the Sinonasal Microbiome
Cited by: 15
Author(s): Ahmed Bassiouni, S. Paramasivan, Arron Shiffer, Matthew R. Dillon, Emily K. Cope, Clare Cooksley, Mahnaz Ramezanpour, Sophia Moraitis, Mohammad Javed Ali, Benjamin S. Bleier, Claudio Callejas, Marjolein Cornet, Richard Douglas, Daniel Lorena Dutra, Christos Georgalas, Richard J. Harvey, Peter H. Hwang, Amber U. Luong, Rodney J. Schlosser, Pongsakorn Tantilipikorn, Marc A. Tewfik, Sarah Vreugde, Peter John Wormald, J. Gregory Caporaso, Alkis James Psaltis
Software Mentions: 9
Published: over 4 years ago

10.3390/metabo11030133

Correlation of Metabolic Profiles of Plasma and Cerebrospinal Fluid of High-Grade Glioma Patients
Cited by: 9
Author(s): Artem D. Rogachev, Н. А. Алемасов, В. А. Иванисенко, Nikita V. Ivanisenko, E. V. Gaisler, Olga Oleshko, С. В. Чересиз, С. В. Мишинов, В. В. Ступак, Andrey G. Pokrovsky
Software Mentions: 9
Published: almost 4 years ago

10.1126/sciadv.abg1921

Environmental vulnerability of the global ocean epipelagic plankton community interactome
Cited by: 47
Author(s): Samuel Chaffron, Erwan Delage, Marko Budinich, Damien Vintache, Nicolas Henry, Charlotte Nef, Mathieu Ardyna, Ahmed A. Zayed, Pedro C. Junger, Pierre E. Galand, Connie Lovejoy, Alison E. Murray, Hugo Sarmento, Tara Oceans Coordinators, Silvia G. Acinas, Marcel Babin, Daniele Iudicone, Olivier Jaillon, Eric Karsenti, Patrick Wincker, Lee Karp‐Boss, Matthew B. Sullivan, Chris Bowler, Colomban de Vargas, Damien Eveillard
Software Mentions: 9
Published: over 3 years ago

10.1099/mgen.0.000168

Correlation between bacterial G+C content, genome size and the G+C content of associated plasmids and bacteriophages
Cited by: 73
Author(s): Apostolos Almpanis, Martin Swain, Derek Gatherer, Neil McEwan
Software Mentions: 8
Published: over 6 years ago

10.7554/eLife.31035

Phenotype inference in an Escherichia coli strain panel
Cited by: 36
Author(s): Marco Galardini, Alexandra Koumoutsi, Lucía Herrera-Domínguez, Juan Antonio Cordero Varela, Anja Telzerow, Omar Wagih, Morgane Wartel, Olivier Clermont, Erick Denamur, Athanasios Typas, Pedro Beltrão
Software Mentions: 8
Published: almost 7 years ago

10.3389/fcell.2021.702741

Wnt Signaling Induces Asymmetric Dynamics in the Actomyosin Cortex of the C. elegans Endomesodermal Precursor Cell
Cited by: 4
Author(s): Francesca Caroti, Wim Thiels, Michiel Vanslambrouck, Rob Jelier
Software Mentions: 8
Published: about 3 years ago

10.7554/eLife.68312

A plant-like mechanism coupling m6A reading to polyadenylation safeguards transcriptome integrity and developmental gene partitioning in Toxoplasma
Cited by: 12
Author(s): Dayana C Farhat, Matthew W. Bowler, Guillaume Communie, Dominique Pontier, Lucid Belmudes, Caroline Mas, Charlotte Corrao, Yohann Couté, Alexandre Bougdour, Thierry Lagrange, Mohamed‐Ali Hakimi, Christopher Swale
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0216511

Modelling tick bite risk by combining random forests and count data regression models
Cited by: 10
Author(s): Irene Garcia‐Martí, R. Zurita-Milla, Arno Swart
Software Mentions: 8
Published: almost 5 years ago

10.1186/s13059-020-02195-w

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
Cited by: 107
Author(s): Alon Shaiber, Amy Willis, Tom O. Delmont, Simon Roux, Lin-Xing Chen, Abigail C. Schmid, Mahmoud Yousef, Andrea R. Watson, Karen Lolans, Özcan C. Esen, Sonny T. M. Lee, Nora Downey, Hilary G. Morrison, Floyd E. Dewhirst, Jessica L. Mark Welch, A. Murat Eren
Software Mentions: 8
Published: about 4 years ago

10.1186/s13059-018-1616-9

Population structure of human gut bacteria in a diverse cohort from rural Tanzania and Botswana
Cited by: 61
Author(s): Matthew E.B. Hansen, Meagan A Rubel, Aubrey Bailey, Alessia Ranciaro, S. R. Thompson, Michael C. Campbell, William Beggs, Jaanki R. Dave, Gaonyadiwe George Mokone, Sununguko Wata Mpoloka, Thomas Nyambo, Christian C. Abnet, Stephen J. Chanock, Frederic D. Bushman, Sarah A. Tishkoff
Software Mentions: 8
Published: almost 6 years ago

10.3390/e23020160

Influence Cascades: Entropy-Based Characterization of Behavioral Influence Patterns in Social Media
Cited by: 5
Author(s): Chathurani Senevirathna, Chathika Gunaratne, William Rand, Chathura Jayalath, Iván Garibay
Software Mentions: 8
Published: almost 4 years ago

10.7554/eLife.47859

Persistent epigenetic memory impedes rescue of the telomeric phenotype in human ICF iPSCs following DNMT3B correction
Cited by: 15
Author(s): Shir Toubiana, Miriam Gagliardi, Mariarosaria Papa, Roberta Manco, Maty Tzukerman, Maria R. Matarazzo, Sara Selig
Software Mentions: 8
Published: about 5 years ago

10.14814/phy2.14880

Animal blood in translational research: How to adjust animal blood viscosity to the human standard
Cited by: 6
Author(s): Paul Ecker, Andreas Sparer, Benjamin Lukitsch, Martin Elenkov, Monika Seltenhammer, Richard Crevenna, Margit Gfoehler, Michael Harasek, Ursula Windberger
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.68265

Spectral signature and behavioral consequence of spontaneous shifts of pupil-linked arousal in human
Cited by: 21
Author(s): Ella Podvalny, Leana E King, Biyu J. He
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-018-22083-5

Chronic helminth infection burden differentially affects haematopoietic cell development while ageing selectively impairs adaptive responses to infection
Cited by: 14
Author(s): Simon A. Babayan, Amy Sinclair, Jessica Duprez, Colin Selman
Software Mentions: 7
Published: almost 7 years ago

10.3389/fninf.2019.00014

Visbrain: A Multi-Purpose GPU-Accelerated Open-Source Suite for Multimodal Brain Data Visualization
Cited by: 44
Author(s): Etienne Combrisson, Raphaël Vallat, Christian O’Reilly, Mainak Jas, Annalisa Pascarella, Anne-Lise Saive, Thomas Thiery, David Meunier, Dmitrii Altukhov, Tarek Lajnef, Perrine Ruby, Aymeric Guillot, Karim Jerbi
Software Mentions: 7
Published: over 5 years ago

10.12688/f1000research.8452.2

The effects of an editor serving as one of the reviewers during the peer-review process
Cited by: 4
Author(s): Marco Giordan, Attila Csikász‐Nagy, Andy Collings, Federico Vaggi
Software Mentions: 7
Published: about 8 years ago

10.1186/s13059-021-02427-7

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
Cited by: 56
Author(s): Nicolai Karcher, Eleonora Nigro, Michal Punčochář, Aitor Blanco-Míguez, Matteo Ciciani, Paolo Manghi, Moreno Zolfo, Fabio Cumbo, Serena Manara, Davide Golzato, Anna Cereseto, Manimozhiyan Arumugam, Thi Phuong Nam Bui, Hanne L. P. Tytgat, Mireia Vallès-Colomer, Willem M. de Vos, Nicola Segata
Software Mentions: 7
Published: over 3 years ago

10.1186/s12859-020-03830-w

CosinorPy: a python package for cosinor-based rhythmometry
Cited by: 31
Author(s): Miha Moškon
Software Mentions: 7
Published: about 4 years ago

10.1186/s13059-019-1868-z

MIA-Sig: multiplex chromatin interaction analysis by signal processing and statistical algorithms
Cited by: 9
Author(s): Minji Kim, Meizhen Zheng, Simon Zhongyuan Tian, Byoungkoo Lee, Jeffrey H. Chuang, Yijun Ruan
Software Mentions: 7
Published: about 5 years ago

10.1007/s00216-021-03261-3

Need for speed: evaluation of dilute and shoot-mass spectrometry for accelerated metabolic phenotyping in bioprocess development
Cited by: 5
Author(s): Alexander M. Reiter, Laura Herbst, Wolfgang Wiechert, Marco Oldiges
Software Mentions: 7
Published: over 3 years ago

10.15252/msb.20198831

The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae
Cited by: 40
Author(s): Marco Galardini, Bede P. Busby, Cristina Viéitez, Alistair S. Dunham, Athanasios Typas, Pedro Beltrão
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pcbi.1008329

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes
Cited by: 6
Author(s): Aleksei Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pcbi.1004896

Deep Neural Networks as a Computational Model for Human Shape Sensitivity
Cited by: 263
Author(s): Jonas Kubilius, Stefania Bracci, Hans Op de Beeck
Software Mentions: 7
Published: over 8 years ago

10.1038/srep30388

Smoking, pregnancy and the subgingival microbiome
Cited by: 31
Author(s): Akshay D. Paropkari, Binnaz Leblebicioğlu, Lisa M. Christian, Purnima Kumar
Software Mentions: 6
Published: over 8 years ago

10.3390/nu11061278

Estimation of Olfactory Sensitivity Using a Bayesian Adaptive Method
Cited by: 14
Author(s): Richard Höchenberger, Kathrin Ohla
Software Mentions: 6
Published: over 5 years ago

10.1093/jxb/erab072

Dynamic histone acetylation in floral volatile synthesis and emission in petunia flowers
Cited by: 19
Author(s): Ryan M. Patrick, Xing-Qi Huang, Natalia Dudareva, Ying Liu
Software Mentions: 6
Published: almost 4 years ago

10.1128/AAC.00504-21

Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance
Cited by: 4
Author(s): Andrej Trauner, Amir Banaei‐Esfahani, Sebastian M. Gygli, Philipp Warmer, Julia Feldmann, Mattia Zampieri, Sònia Borrell, Ben C. Collins, Christian Beisel, Ruedi Aebersold, Sébastien Gagneux
Software Mentions: 6
Published: over 3 years ago

10.15252/msb.20199146

Mammalian gene expression variability is explained by underlying cell state
Cited by: 85
Author(s): Robert T. Foreman, Roy Wollman
Software Mentions: 6
Published: almost 5 years ago

10.3389/fpsyt.2021.643609

Comorbid Chronic Pain and Depression: Shared Risk Factors and Differential Antidepressant Effectiveness
Cited by: 40
Author(s): William H. Roughan, Adrián I. Campos, Luis M. García-Marín, Gabriel Cuéllar-Partida, Michelle K. Lupton, Ian B. Hickie, Sarah E. Medland, Naomi R. Wray, Enda M. Byrne, Trung Thanh Ngo, Nicholas G. Martin, Miguel E. Rentería
Software Mentions: 6
Published: over 3 years ago

10.3389/fpls.2019.00698

PropaNet: Time-Varying Condition-Specific Transcriptional Network Construction by Network Propagation
Cited by: 5
Author(s): Hongryul Ahn, Kyuri Jo, Dabin Jeong, Minwoo Pak, Jihye Hur, Wi Hoon Jung, Sun Kim
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-019-3320-5

DynaVenn: web-based computation of the most significant overlap between ordered sets
Cited by: 14
Author(s): Jérémy Amand, Tobias Fehlmann, Christina Backes, Andreas Keller
Software Mentions: 6
Published: about 5 years ago

10.1186/s13059-020-02099-9

Contiguous and stochastic CHH methylation patterns of plant DRM2 and CMT2 revealed by single-read methylome analysis
Cited by: 11
Author(s): Keith D. Harris, Assaf Zemach
Software Mentions: 6
Published: over 4 years ago

10.1186/s13148-021-01029-1

Clinical evaluation of Bladder CARE, a new epigenetic test for bladder cancer detection in urine samples
Cited by: 12
Author(s): Paolo Piatti, Yap Ching Chew, Michiko Suwoto, Taikun Yamada, Benjamin Jara, Xiaoteng Jia, Wei Guo, Saum Ghodoussipour, Siamak Daneshmand, Hamed Ahmadi, Jeffrey M. Rice, Jeffrey M. Bhasin, Faith Holloway, Yvonne Tsai, Yoshitomo Chihara, Gangning Liang
Software Mentions: 6
Published: over 3 years ago

10.3389/fmed.2019.00126

Distinguishing Between Biological and Technical Replicates in Hypertension Research on Isolated Arteries
Cited by: 11
Author(s): D Tsvetkov, Е. В. Колпаков, Mario Kaßmann, Rudolf Schubert, Maik Gollasch
Software Mentions: 6
Published: over 5 years ago

10.3389/fncom.2018.00083

Task-Related Synaptic Changes Localized to Small Neuronal Population in Recurrent Neural Network Cortical Models
Cited by: 6
Author(s): Satoshi Kuroki, Takuya Isomura
Software Mentions: 6
Published: about 6 years ago

10.3389/fimmu.2018.00056

The Immune and Non-Immune Pathways That Drive Chronic Gastrointestinal Helminth Burdens in the Wild
Cited by: 20
Author(s): Simon A. Babayan, Wei Liu, Graham Hamilton, Elizabeth Kilbride, Evelyn C. Rynkiewicz, Melanie Clerc, Amy B. Pedersen
Software Mentions: 6
Published: almost 7 years ago

10.1534/g3.114.016196

A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, Aedes aegypti
Cited by: 53
Author(s): Benjamin R. Evans, Andrea Gloria‐Soria, Lin Hou, Carolyn S. McBride, Mariangela Bonizzoni, Hongyu Zhao, Jeffrey R. Powell
Software Mentions: 6
Published: over 9 years ago

10.2196/28265

Correlation of Population SARS-CoV-2 Cycle Threshold Values to Local Disease Dynamics: Exploratory Observational Study
Cited by: 18
Author(s): Chak Foon Tso, Anurag Garikipati, Abigail Green‐Saxena, Qingqing Mao, Ritankar Das
Software Mentions: 6
Published: over 3 years ago

10.7717/peerj.5882

imGLAD: accurate detection and quantification of target organisms in metagenomes
Cited by: 20
Author(s): Juan Castro, Luis M. Rodriguez-R, William T. Harvey, Michael R. Weigand, Janet K. Hatt, Michelle Qiu Carter, Konstantinos T. Konstantinidis
Software Mentions: 5
Published: about 6 years ago

10.3390/ijms22031073

Machine Learning Analysis of Longevity-Associated Gene Expression Landscapes in Mammals
Cited by: 6
Author(s): Anton Kulaga, Eugen Ursu, Dmitri Toren, Vladyslava Tyshchenko, Rodrigo Guinea, Malvina Pushkova, Vadim E. Fraifeld, Robi Tăcutu
Software Mentions: 5
Published: almost 4 years ago

10.1093/gigascience/giaa046

Global ocean resistome revealed: Exploring antibiotic resistance gene abundance and distribution in TARA Oceans samples
Cited by: 49
Author(s): Rafael R. C. Cuadrat, Maria Sorokina, Bruno de Bezerril Andrade, Tobias Goris, Alberto M. R. Dávila
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.66018

Information flow, cell types and stereotypy in a full olfactory connectome
Cited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0235758

Development and validation of risk prediction models for multiple cardiovascular diseases and Type 2 diabetes
Cited by: 16
Author(s): Mehrdad Rezaee, Igor Putrenko, Arsia Takeh, Andrea Ganna, Erik Ingelsson
Software Mentions: 5
Published: over 4 years ago

10.3389/fnins.2021.650219

A Dissociation of Attention, Executive Function and Reaction to Difficulty: Development of the MindPulse Test, a Novel Digital Neuropsychological Test for Precise Quantification of Perceptual-Motor Decision-Making Processes
Cited by: 2
Author(s): Sandra Suárez, Bertrand Eynard, Sylvie Granon
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0201469

Patient-specific anatomical model for deep brain stimulation based on 7 Tesla MRI
Cited by: 55
Author(s): Yuval Duchin, Reuben R. Shamir, Rémi Patriat, Jin‐Young Kim, Jerrold L. Vitek, Guillermo Sapiro, Noam Harel
Software Mentions: 5
Published: over 6 years ago

10.3389/fpls.2019.00875

Evaluation of the Phenotypic Repeatability of Canopy Temperature in Wheat Using Continuous-Terrestrial and Airborne Measurements
Cited by: 32
Author(s): David M. Deery, G. J. Rebetzke, J.A.J. Berni, William D. Bovill, Richard A. James, Anthony G. Condon, Robert T. Furbank, Scott C. Chapman, Ronald P. Fischer
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.71393

Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies
Cited by: 18
Author(s): Angela M Phillips, Katherine R. Lawrence, Alief Moulana, Thomas Dupic, Jeffrey S. Chang, Milo S. Johnson, Ivana Cvijović, Thierry Mora, Aleksandra M. Walczak, Michael M. Desai
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pgen.1007631

Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic
Cited by: 16
Author(s): Peter A. Combs, Hunter B. Fraser
Software Mentions: 5
Published: about 6 years ago

10.3390/life11040278

Epigenetic Characteristics of Human Subtelomeres Vary in Cells Utilizing the Alternative Lengthening of Telomeres (ALT) Pathway
Cited by: 1
Author(s): Shir Toubiana, Aya Tzur-Gilat, Sara Selig
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-87064-7

Predicting the clinical management of skin lesions using deep learning
Cited by: 16
Author(s): Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
Software Mentions: 5
Published: over 3 years ago

10.1016/j.celrep.2020.02.093

Biased Connectivity of Brain-wide Inputs to Ventral Subiculum Output Neurons
Cited by: 35
Author(s): Ryan Wee, Andrew F. MacAskill
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1009316

A probabilistic model for the ultradian timing of REM sleep in mice
Cited by: 6
Author(s): Sung-Ho Park, Justin Baik, June Seok Hong, Hanna Antila, Benjamin Kurland, Shinjae Chung, Franz Weber
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-77367-6

An efficient machine learning-based approach for screening individuals at risk of hereditary haemochromatosis
Cited by: 4
Author(s): Patricia Martins Conde, Thomas Sauter, Thanh-Hung Nguyen
Software Mentions: 5
Published: about 4 years ago

10.1128/mBio.00521-21

Patterns of Gene Content and Co-occurrence Constrain the Evolutionary Path toward Animal Association in Candidate Phyla Radiation Bacteria
Cited by: 26
Author(s): Alexander L. Jaffe, Alex D. Thomas, Christine He, Ray Keren, Luis E. Valentin-Alvarado, Patrick Munk, Keith Bouma‐Gregson, Ibrahim Farag, Yuki Amano, Rohan Sachdeva, Patrick T. West
Software Mentions: 5
Published: over 3 years ago

10.3390/antiox10081278

Vitamin C Supplementation in Healthy Individuals Leads to Shifts of Bacterial Populations in the Gut—A Pilot Study
Cited by: 29
Author(s): Antonius T. Otten, Arno R. Bourgonje, Vera Peters, Behrooz Z. Alizadeh, Gerard Dijkstra, Hermie J. M. Harmsen
Software Mentions: 5
Published: over 3 years ago

10.1186/s13007-021-00718-5

Reference-based QUantification Of gene Dispensability (QUOD)
Cited by: 2
Author(s): Katharina Sielemann, Bernd Weißhaar, Boas Pucker
Software Mentions: 4
Published: almost 4 years ago

10.1111/tpj.14312

μ<scp>CT</scp> trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
Cited by: 19
Author(s): Nathan Hughes, Hugo R. Oliveira, Nick Fradgley, Fiona Corke, James Cockram, John H. Doonan, Cândida Nibau
Software Mentions: 4
Published: over 5 years ago

10.1038/s41597-021-00823-z

Collegiate athlete brain data for white matter mapping and network neuroscience
Cited by: 3
Author(s): Bradley Caron, Ricardo Stuck, Brent McPherson, Daniel Bullock, Lindsey Kitchell, Joshua Faskowitz, Derek Kellar, Hu Cheng, Sharlene D. Newman, Nicholas Port, Franco Pestilli
Software Mentions: 4
Published: almost 4 years ago

10.1002/hbm.25144

High‐density intracranial recordings reveal a distinct site in anterior dorsal precentral cortex that tracks perceived speech
Cited by: 10
Author(s): Julia Berezutskaya, Clarissa Baratin, Zachary V. Freudenburg, N.F. Ramsey
Software Mentions: 4
Published: over 4 years ago

10.1080/19490976.2020.1814107

Young versus aged microbiota transplants to germ-free mice: increased short-chain fatty acids and improved cognitive performance
Cited by: 58
Author(s): Jun-Young Lee, Venugopal Reddy Venna, David J. Durgan, Huanan Shi, Jacob Hudobenko, Nagireddy Putluri, Joseph F. Petrosino, Louise D. McCullough, Robert M. Bryan
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0242334

Predicting time to graduation at a large enrollment American university
Cited by: 6
Author(s): John M. Aiken, Riccardo De Bin, M. Hjorth‐Jensen, Marcos D. Caballero
Software Mentions: 4
Published: about 4 years ago

10.1186/s40337-018-0191-5

Literary reading and eating disorders: survey evidence of therapeutic help and harm
Cited by: 11
Author(s): Emily T. Troscianko
Software Mentions: 4
Published: over 6 years ago

10.1523/ENEURO.0378-20.2021

Time Course of Alterations in Adult Spinal Motoneuron Properties in the SOD1(G93A) Mouse Model of ALS
Cited by: 11
Author(s): Seoan Huh, C. J. Heckman, Marin Manuel
Software Mentions: 4
Published: almost 4 years ago

10.7554/eLife.63711

Standardized and reproducible measurement of decision-making in mice
Cited by: 72
Author(s): Valeria Aguillon-Rodriguez, Dora E. Angelaki, H Bayer, Niccolò Bonacchi, Matteo Carandini, Fanny Cazettes, Gaelle Chapuis, Anne K. Churchland, Yang Dan, Eric DeWitt, Mayo Faulkner, Hamish Forrest, Laura Haetzel, Michael Häusser, Sonja B. Hofer, Fei Hu, Anup Khanal, Christopher Krasniak, Inês Laranjeira, Zachary F. Mainen, Guido T. Meijer, Nathaniel J Miska, Thomas D. Mrsic-Flogel, Masayoshi Murakami, Jean‐Paul Noel, Alejandro Pan-Vazquez, Cyrille Rossant, Joshua I. Sanders, Karolina Socha, Rebecca Terry, Anne E Urai, Hernando Vergara, Miles J. Wells, Christian J. Wilson, Ilana B. Witten, Lauren E Wool, Anthony M. Zador
Software Mentions: 4
Published: over 3 years ago

10.3758/s13428-020-01392-6

PyTrack: An end-to-end analysis toolkit for eye tracking
Cited by: 11
Author(s): Upamanyu Ghose, Arvind A. Srinivasan, W. Paul Boyce, Hong Xu, Eng Siong Chng
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0245368

Utilization of the Naranjo scale to evaluate adverse drug reactions at a free-standing children’s hospital
Cited by: 11
Author(s): Madhavi Murali, Sarah L. Suppes, Keith Feldman, Jennifer L. Goldman
Software Mentions: 4
Published: almost 4 years ago

10.1177/2041669517699628

Sensitivity to Nonaccidental Configurations of Two-Line Stimuli
Cited by: 8
Author(s): Jonas Kubilius, Charlotte Sleurs, Johan Wagemans
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-020-72147-8

Noninvasive estimation of aortic hemodynamics and cardiac contractility using machine learning
Cited by: 15
Author(s): Vasiliki Bikia, Theodore G. Papaioannou, Stamatia Pagoulatou, Georgios Rovas, Evangelos Oikonomou, Gerasimos Siasos, Dimitris Tousoulis, Nikolaos Stergiopulos
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-58413-9

Chronotype assessment via a large scale socio-demographic survey favours yearlong Standard time over Daylight Saving Time in central Europe
Cited by: 25
Author(s): Martin Sládek, Michaela Kudrnáčová Röschová, Věra Adámkova, Dana Hamplová, Alena Sumová
Software Mentions: 4
Published: almost 5 years ago

10.1016/j.tine.2019.02.004

Whole-brain white matter organization, intelligence, and educational attainment
Cited by: 33
Author(s): Joe Bathelt, Gaia Scerif, Anna C. Nobre, Duncan E. Astle
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008476

Hi-C implementation of genome structure for in silico models of radiation-induced DNA damage
Cited by: 7
Author(s): Samuel Ingram, Nicholas Henthorn, John-William Warmenhoven, N.F. Kirkby, Ranald I Mackay, Karen J Kirkby, Michael J Merchant
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1008377

Active probing to highlight approaching transitions to ictal states in coupled neural mass models
Cited by: 2
Author(s): Vinícius Rezende Carvalho, Márcio Flávio Dutra Moraes, Sydney S. Cash, Eduardo M. A. M. Mendes
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41419-020-03232-z

Molecular subtype-specific responses of colon cancer cells to the SMAC mimetic Birinapant
Cited by: 12
Author(s): Michael Fichtner, Emir Bozkurt, Manuela Salvucci, Christopher McCann, Katherine McAllister, Luise Halang, Heiko Düßmann, Sinéad Kinsella, Nyree Crawford, Tamas Sessler, Daniel B. Longley, Jochen H M Prehn
Software Mentions: 4
Published: about 4 years ago

10.3389/fnbot.2019.00076

Hybrid Brain-Computer-Interfacing for Human-Compliant Robots: Inferring Continuous Subjective Ratings With Deep Regression
Cited by: 3
Author(s): Lukas Dominique Josef Fiederer, Martin A. Volker, Robin Tibor Schirrmeister, Wolfram Burgard, Joschka Boedecker, Tonio Ball
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-43591-y

Apoptotic endothelial cells release small extracellular vesicles loaded with immunostimulatory viral-like RNAs
Cited by: 43
Author(s): Marie-Pierre Hardy, Éric Audemard, Francis Migneault, Albert Feghaly, Sylvie Brochu, Patrick Gendron, Éric Boilard, François Major, Mélanie Dieudé, Marie‐Josée Hébert, Claude Perreault
Software Mentions: 4
Published: over 5 years ago

10.1002/1878-0261.12895

Benchmarking HLA genotyping and clarifying HLA impact on survival in tumor immunotherapy
Cited by: 15
Author(s): Xiangyong Li, Chi Zhou, Ke Chen, Bingding Huang, Qi Liu, Yue Hao
Software Mentions: 4
Published: almost 4 years ago

10.7554/eLife.30352

Pedunculopontine glutamatergic neurons control spike patterning in substantia nigra dopaminergic neurons
Cited by: 31
Author(s): Daniel J. Galtieri, Chad M Estep, David L. Wokosin, Stephen F. Traynelis, D. James Surmeier
Software Mentions: 4
Published: about 7 years ago

10.3390/plants10040646

New Cross-Talks between Pathways Involved in Grapevine Infection with ‘Candidatus Phytoplasma solani’ Revealed by Temporal Network Modelling
Cited by: 3
Author(s): Blaž Škrlj, Maruša Pompe-Novak, Günter Brader, Barbara Anžič, Živa Ramšak, Kristina Gruden, Jan Kralj, Aleš Kladnik, Nada Lavrač, Thomas Roitsch, Marina Dermastia
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-018-4616-y

Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
Cited by: 36
Author(s): Ole K. Tørresen, Marine S. O. Brieuc, Monica Hongrø Solbakken, Elin Sørhus, Alexander Johan Nederbragt, Kjetill S. Jakobsen, Sonnich Meier, Rolf B. Edvardsen, Sissel Jentoft
Software Mentions: 3
Published: over 6 years ago

10.1038/srep40268

Disrupted global metastability and static and dynamic brain connectivity across individuals in the Alzheimer’s disease continuum
Cited by: 82
Author(s): Aldo Córdova‐Palomera, Tobias Kaufmann, Karin Persson, Dag Alnæs, Nhat Trung Doan, Torgeir Moberget, Martina J. Lund, Maria Lage Barca, Andreas Engvig, Anne Brækhus, Knut Engedal, Ole A. Andreassen, Geir Selbæk, Lars T. Westlye
Software Mentions: 3
Published: almost 8 years ago

10.1002/brb3.1031

Differential patterns of age‐related cortical and subcortical functional connectivity in 6‐to‐10 year old children: A connectome‐wide association study
Cited by: 9
Author(s): Carolyn D. Langen, Ryan L. Muetzel, Laura M. E. Blanken, Aad van der Lugt, Henning Tiemeier, Frank C. Verhulst, Wiro J. Niessen, Tonya White
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-017-09644-w

Fungal lifestyle reflected in serine protease repertoire
Cited by: 85
Author(s): Anna Muszewska, Marta M. Stepniewska-Dziubinska, Kamil Steczkiewicz, Julia Pawłowska, Agata Dziedzic, Krzysztof Ginalski
Software Mentions: 3
Published: over 7 years ago

10.3390/v13030509

Avian Influenza A Viruses Reassort and Diversify Differently in Mallards and Mammals
Cited by: 13
Author(s): Ketaki Ganti, Anish Bagga, Juliana DaSilva, Samuel S. Shepard, John Barnes, Susan A. Shriner, Katia Koelle, Anice C. Lowen
Software Mentions: 3
Published: over 3 years ago

Projects: pypi: statsmodels

Papers Mentioning statsmodels 277