Papers: 10.1186/s13059-021-02264-8
https://doi.org/10.1186/s13059-021-02264-8
GeneWalk identifies relevant gene functions for a biological context using network representation learning
Cited by: 26
Author(s): Robert Ietswaart, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger, L. Stirling Churchman
Published: over 4 years ago
Software Mentions 14
bioconductor: GenomicRanges
Representation and manipulation of genomic intervalsPapers that mentioned: 323
Very Likely Science (90)
bioconductor: PADOG
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)Papers that mentioned: 19
Very Likely Science (100)
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browserPapers that mentioned: 107
Very Likely Science (90)
cran: node2vec
Algorithmic Framework for Representational Learning on GraphsPapers that mentioned: 104
Very Likely Science (85)
Very Likely Science (100)
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pypi: networkx
Python package for creating and manipulating graphs and networksPapers that mentioned: 110
Very Likely Science (100)
Very Likely Science (100)
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.Papers that mentioned: 827
Very Likely Science (75)
pypi: scikit-learn
A set of python modules for machine learning and data miningPapers that mentioned: 2,431
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (90)
Very Likely Science (85)