cran: word2vec | Projects | Ecosyste.ms: Papers

10.2196/24889

A Novel Machine Learning Framework for Comparison of Viral COVID-19–Related Sina Weibo and Twitter Posts: Workflow Development and Content Analysis
Cited by: 7
Author(s): Shi Chen, Lina Zhou, Yunya Song, Qian Xu, Ping Wang, Kanlun Wang, Yaorong Ge, Daniel Janies
Software Mentions: 15
Published: over 3 years ago

10.1186/s13059-021-02264-8

GeneWalk identifies relevant gene functions for a biological context using network representation learning
Cited by: 26
Author(s): Robert Ietswaart, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger, L. Stirling Churchman
Software Mentions: 14
Published: over 3 years ago

10.1186/s12918-018-0662-y

Integrating node embeddings and biological annotations for genes to predict disease-gene associations
Cited by: 27
Author(s): Sezin Kircali Ata, Le Ou-Yang, Yuan Fang, Chee-Keong Kwoh, Min Wu, Xiaoli Li
Software Mentions: 11
Published: over 5 years ago

10.1186/s12859-021-04055-1

Juxtapose: a gene-embedding approach for comparing co-expression networks
Cited by: 8
Author(s): Katie Ovens, Farhad Maleki, B. Frank Eames, Ian McQuillan
Software Mentions: 10
Published: about 3 years ago

10.1016/j.dib.2020.105195

Dataset of depressive posts in Russian language collected from social media
Cited by: 12
Author(s): Sergazy Narynov, Daniyar Mukhtarkhanuly, Batyrkhan Omarov
Software Mentions: 10
Published: about 4 years ago

10.16910/jemr.10.6.1

Abstracts of the 19th European Conference on Eye Movements 2017
Cited by: 3
Author(s): Ralph Radach, Heiner Deubel, Christian Vorstius, Markus Hofmann
Software Mentions: 9
Published: over 6 years ago

10.3389/fimmu.2021.680687

Immune2vec: Embedding B/T Cell Receptor Sequences in ℝN Using Natural Language Processing
Cited by: 21
Author(s): Miri Ostrovsky-Berman, Boaz Frankel, Pazit Polak, Gur Yaari
Software Mentions: 9
Published: almost 3 years ago

10.1371/journal.pcbi.1008724

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships
Cited by: 81
Author(s): Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, F. Diblen, Simon Rogers, Justin J. J. van der Hooft
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0224452

Comparative analysis on Facebook post interaction using DNN, ELM and LSTM
Cited by: 8
Author(s): Sabih Ahmad Khan, Hsien-Tsung Chang
Software Mentions: 9
Published: over 4 years ago

10.1186/s12870-019-1693-2

A k-mer grammar analysis to uncover maize regulatory architecture
Cited by: 32
Author(s): Maria Katherine Mejía‐Guerra, Edward S. Buckler
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pntd.0008755

Combining natural language processing and metabarcoding to reveal pathogen-environment associations
Cited by: 2
Author(s): David Molik, DeAndre Tomlinson, Shane Davitt, Eric Lease Morgan, Matthew Sisk, Benjamin Roche, Natalie Meyers, Michael E. Pfrender
Software Mentions: 8
Published: about 3 years ago

10.3390/metabo10050202

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources
Cited by: 59
Author(s): Tara Eicher, Garrett Kinnebrew, Andrew Patt, Kyle Spencer, Kevin L. Ying, Qin Ma, Raghu Machiraju, Ewy A. Mathé
Software Mentions: 8
Published: about 4 years ago

10.1371/journal.pcbi.1006907

Ten quick tips for effective dimensionality reduction
Cited by: 164
Author(s): Linh P. Nguyen, Susan Holmes
Software Mentions: 8
Published: almost 5 years ago

10.1155/2021/5573740

Brain Connectivity Studies on Structure-Function Relationships: A Short Survey with an Emphasis on Machine Learning
Cited by: 10
Author(s): Simon Wein, Gustavo Deco, Ana Maria Tomé, Markus Goldhacker, Wilhelm M. Malloni, Mark W. Greenlee, Elmar Lang
Software Mentions: 7
Published: almost 3 years ago

10.1186/s13321-019-0342-y

KMR: knowledge-oriented medicine representation learning for drug–drug interaction and similarity computation
Cited by: 16
Author(s): Ying Shen, Kun Yuan, Min Yang, Buzhou Tang, Yaliang Li, Nan Du, Kai Lei
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-021-85016-9

Comparative analysis of machine learning algorithms for computer-assisted reporting based on fully automated cross-lingual RadLex mappings
Cited by: 4
Author(s): Máté E. Maros, Chang Gyu Cho, Andreas Junge, Benedikt Kämpgen, Victor Saase, Fabian Siegel, Frederik Trinkmann, Thomas Ganslandt, Christoph Groden, Holger Wenz
Software Mentions: 7
Published: about 3 years ago

10.2196/21660

Social Media as a Research Tool (SMaaRT) for Risky Behavior Analytics: Methodological Review
Cited by: 10
Author(s): Tavleen Singh, Kirk Roberts, Trevor Cohen, Nathan K. Cobb, Jing Wang, Kayo Fujimoto, Sahiti Myneni
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-019-46761-0

Lower Attentional Skills predict increased exploratory foraging patterns
Cited by: 16
Author(s): Charlotte Van den Driessche, Françoise Chevrier, Axel Cleeremans, Jérôme Sackur
Software Mentions: 7
Published: almost 5 years ago

10.1007/s10994-020-05882-8

Embedding-based Silhouette community detection
Cited by: 10
Author(s): Blaž Škrlj, Jan Kralj, Nada Lavrač
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13321-021-00552-w

DTi2Vec: Drug–target interaction prediction using network embedding and ensemble learning
Cited by: 20
Author(s): Maha A. Thafar, Rawan S. Olayan, Somayah Albaradei, Vladimir B. Bajic, Takashi Gojobori, Magbubah Essack, Xin Gao
Software Mentions: 6
Published: over 2 years ago

10.1186/s12859-019-3071-3

A hybrid deep learning framework for bacterial named entity recognition with domain features
Cited by: 8
Author(s): Xusheng Liu, Chengcheng Fu, Rugang Zhong, Duo Zhong, Tingting He, Xingpeng Jiang
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pcbi.1008277

EventEpi—A natural language processing framework for event-based surveillance
Cited by: 11
Author(s): Auss Abbood, Alexander Ullrich, Rüdiger Busche, Stéphane Ghozzi
Software Mentions: 6
Published: over 3 years ago

10.1155/2021/3774607

Automated Amharic News Categorization Using Deep Learning Models
Cited by: 9
Author(s): Demeke Endalie, Getamesay Haile
Software Mentions: 6
Published: almost 3 years ago

10.1371/journal.pone.0223477

Extractive single document summarization using binary differential evolution: Optimization of different sentence quality measures
Cited by: 28
Author(s): Naveen Saini, Sriparna Saha, Dhiraj Chakraborty, Pushpak Bhattacharyya
Software Mentions: 6
Published: over 4 years ago

10.2196/21212

Patterns of Routes of Administration and Drug Tampering for Nonmedical Opioid Consumption: Data Mining and Content Analysis of Reddit Discussions
Cited by: 15
Author(s): Duilio Balsamo, Paolo Bajardi, Alberto Salomone, Rossano Schifanella
Software Mentions: 6
Published: over 3 years ago

10.1007/s10462-021-10030-2

Over a decade of social opinion mining: a systematic review
Cited by: 23
Author(s): Keith Cortis, Brian Davis
Software Mentions: 6
Published: almost 3 years ago

10.1016/j.csbj.2020.05.017

Constructing knowledge graphs and their biomedical applications
Cited by: 115
Author(s): David N. Nicholson, Casey S. Greene
Software Mentions: 6
Published: over 4 years ago

10.1186/s13326-019-0212-6

Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes
Cited by: 6
Author(s): Mercedes Arguello-Casteleiro, Robert Stevens, Julio Des-Diz, Chris Wroe, M.J. Fernandez-Prieto, Nava Maroto, Diego Maseda-Fernandez, George Demetriou, Simon Peters, P. J. W. Noble, Phil Jones, Joanna Dukes‐McEwan, Alan Radford, John Keane, Goran Nenadić
Software Mentions: 6
Published: over 4 years ago

10.1186/s12859-020-03816-8

Graph embeddings on gene ontology annotations for protein–protein interaction prediction
Cited by: 14
Author(s): Xiaoshi Zhong, Jagath C. Rajapakse
Software Mentions: 6
Published: over 3 years ago

10.1007/s10994-020-05890-8

Propositionalization and embeddings: two sides of the same coin
Cited by: 20
Author(s): Nada Lavrač, Blaž Škrlj, Marko Robnik–Šikonja
Software Mentions: 6
Published: almost 4 years ago

10.3390/e23030322

Integrate Candidate Answer Extraction with Re-Ranking for Chinese Machine Reading Comprehension
Cited by: 0
Author(s): Junjie Zeng, Xiaoya Sun, Qi Zhang, Xinmeng Li
Software Mentions: 6
Published: about 3 years ago

10.1371/journal.pone.0212778

Natural language processing and machine learning algorithm to identify brain MRI reports with acute ischemic stroke
Cited by: 53
Author(s): Chulho Kim, Vivienne J. Zhu, Jihad S. Obeid, Leslie A. Lenert
Software Mentions: 5
Published: about 5 years ago

10.1186/s12911-017-0556-8

Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach
Cited by: 111
Author(s): Wei-Hung Weng, Kavishwar B. Wagholikar, Alexa T. McCray, Peter Szolovits, Henry C. Chueh
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0218264

Predicting biomedical relationships using the knowledge and graph embedding cascade model
Cited by: 18
Author(s): Xiaomin Liang, Daifeng Li, Min Song, Andrew D. Madden, Ying Ding, Yi Bu
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pcbi.1008229

DeepHE: Accurately predicting human essential genes based on deep learning
Cited by: 24
Author(s): Xue Zhang, Wangxin Xiao, Weijia Xiao
Software Mentions: 5
Published: over 3 years ago

10.1001/jamanetworkopen.2021.15661

Gender Disparity in Evaluation of Internal Medicine Clerkship Performance
Cited by: 6
Author(s): Deborah J Gorth, Rogan Magee, S Rosenberg, Nina Mingioni
Software Mentions: 5
Published: almost 3 years ago

10.1371/journal.pone.0246751

Improving the state-of-the-art in Thai semantic similarity using distributional semantics and ontological information
Cited by: 5
Author(s): Ponrudee Netisopakul, Gerhard Wohlgenannt, Aleksei Pulich, Zar Zar Hlaing
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pcbi.1009345

Learning, visualizing and exploring 16S rRNA structure using an attention-based deep neural network
Cited by: 11
Author(s): Zhengqiao Zhao, Stephen Woloszynek, Felix Agbavor, Joshua Chang Mell, Bahrad A. Sokhansanj, Gail Rosen
Software Mentions: 5
Published: over 2 years ago

10.1186/s12864-020-6661-6

Analysis of heterogeneous genomic samples using image normalization and machine learning
Cited by: 3
Author(s): Sunitha Basodi, Pelin Icer Baykal, Alexander Zelikovsky, Pavel Skums, Yi Pan
Software Mentions: 5
Published: over 3 years ago

10.3389/fncom.2018.00095

Brain Network Analysis and Classification Based on Convolutional Neural Network
Cited by: 18
Author(s): Meng Liu, Jing Xiang
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0234908

Machine learning and natural language processing methods to identify ischemic stroke, acuity and location from radiology reports
Cited by: 59
Author(s): Charlene Ong, Agni Orfanoudaki, Rebecca Zhang, Francois Pierre M. Caprasse, Meghan R. Hutch, Liang Ma, Darian Fard, Oluwafemi Balogun, Matthew Miller, Margaret A. Minnig, Hanife Saglam, Brenton Prescott, David M. Greer, Stelios M. Smirnakis, Dimitris Bertsimas
Software Mentions: 5
Published: almost 4 years ago

10.3389/frai.2020.584784

Using Word Embeddings to Learn a Better Food Ontology
Cited by: 7
Author(s): Jason Youn, Tarini Naravane, Ilias Tagkopoulos
Software Mentions: 5
Published: over 3 years ago

10.12688/f1000research.27621.1

A studyforrest extension, an annotation of spoken language in the German dubbed movie “Forrest Gump” and its audio-description
Cited by: 4
Author(s): Christian Olaf Häusler, Michael Hanke
Software Mentions: 5
Published: over 3 years ago

10.3389/fnins.2021.605115

Diagnosis of Alzheimer’s Disease Using Brain Network
Cited by: 12
Author(s): Ramesh Kumar Lama, Goo‐Rak Kwon
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0248552

KG2Vec: A node2vec-based vectorization model for knowledge graph
Cited by: 11
Author(s): YueQun Wang, Liyan Dong, XiaoQuan Jiang, Xintao Ma, Yongli Li, Hao Zhang
Software Mentions: 5
Published: about 3 years ago

10.3389/fcell.2020.00673

Named Entity Recognition and Relation Detection for Biomedical Information Extraction
Cited by: 63
Author(s): Nadeesha Perera, Matthias Dehmer, Frank Emmert‐Streib
Software Mentions: 5
Published: over 3 years ago

10.3389/fpsyg.2016.01646

Predicting Lexical Priming Effects from Distributional Semantic Similarities: A Replication with Extension
Cited by: 6
Author(s): Fritz Günther, Carolin Dudschig, Barbara Kaup
Software Mentions: 5
Published: over 7 years ago

10.3389/fneur.2021.649521

Prediction of 30-Day Readmission After Stroke Using Machine Learning and Natural Language Processing
Cited by: 16
Author(s): Christina Lineback, Ravi Prakash Garg, Elissa Oh, Andrew M. Naidech, Jane L. Holl, Shyam Prabhakaran
Software Mentions: 5
Published: almost 3 years ago

10.1371/journal.pcbi.1009138

Behavioral correlates of cortical semantic representations modeled by word vectors
Cited by: 6
Author(s): Shogo Nishida, Antione Blanc, Naoya Maeda, Masataka Kado, Shinji Nishimoto
Software Mentions: 5
Published: almost 3 years ago

10.1186/s13059-020-01977-6

Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
Cited by: 67
Author(s): Jacob Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0236827

Extraction of radiographic findings from unstructured thoracoabdominal computed tomography reports using convolutional neural network based natural language processing
Cited by: 12
Author(s): Mohit Pandey, Zhuoran Xu, Evan Sholle, Gabriel Maliakal, Gurpreet Singh, Zahra Fatima, Daria Larine, Benjamin C. Lee, Jing Wang, Alexander R. van Rosendael, Leslee J. Shaw, James K. Min, Subhi J. Al’Aref
Software Mentions: 5
Published: almost 4 years ago

10.2196/15293

Detection of Suicidality Among Opioid Users on Reddit: Machine Learning–Based Approach
Cited by: 24
Author(s): Hannah Yao, Sina Rashidian, Xinyu Dong, Hongyi Duanmu, Richard N. Rosenthal, Fusheng Wang
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0223404

Technology opportunity discovery by structuring user needs based on natural language processing and machine learning
Cited by: 14
Author(s): Taeyeoun Roh, Yujin Jeong, Hye-Jin Jang, Byungun Yoon
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0194136

Emotion computing using Word Mover’s Distance features based on Ren_CECps
Cited by: 11
Author(s): Fuji Ren, Ning Liu
Software Mentions: 5
Published: about 6 years ago

10.1007/s41109-020-00257-3

Evolving network representation learning based on random walks
Cited by: 8
Author(s): Farzaneh Heidari, Manos Papagelis
Software Mentions: 5
Published: about 4 years ago

10.3390/s21113747

Multi-Criteria Recommendation Systems to Foster Online Grocery
Cited by: 3
Author(s): Manar Mohamed Hafez, Rebeca P. Díaz Redondo, Ana Fernández Vilas, Héctor Olivera Pazó
Software Mentions: 5
Published: almost 3 years ago

10.2196/21453

Natural Language Processing–Based Virtual Cofacilitator for Online Cancer Support Groups: Protocol for an Algorithm Development and Validation Study
Cited by: 6
Author(s): Yvonne Leung, Elise Wouterloot, Achini Adikari, Graeme Hirst, Daswin De Silva, Jiahui Wong, Jacqueline L. Bender, Mathew Gancarz, David Gratzer, Damminda Alahakoon, Mary Jane Esplen
Software Mentions: 5
Published: over 3 years ago

10.1007/s12559-021-09839-4

Automatic Expansion of Domain-Specific Affective Models for Web Intelligence Applications
Cited by: 3
Author(s): Albert Weichselbraun, Jakob Steixner, Adrian Braşoveanu, Arno Scharl, Max Göbel, Lyndon Nixon
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-017-12586-y

The Hidden Flow Structure and Metric Space of Network Embedding Algorithms Based on Random Walks
Cited by: 11
Author(s): Weiwei Gu, L. Gong, Xiaodan Lou, Jiang Zhang
Software Mentions: 5
Published: over 6 years ago

10.3390/s20164501

Benchmark-Based Reference Model for Evaluating Botnet Detection Tools Driven by Traffic-Flow Analytics
Cited by: 17
Author(s): Katherinne Shirley Huancayo Ramos, Marco Antonio Sotelo Monge, Jorge Maestre Vidal
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12911-016-0306-3

Temporal bone radiology report classification using open source machine learning and natural langue processing libraries
Cited by: 15
Author(s): Aaron J. Masino, Robert W. Grundmeier, Jeffrey W. Pennington, John A. Germiller, E. Bryan Crenshaw
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0242050

A versatile framework for resource-limited sentiment articulation, annotation, and analysis of short texts
Cited by: 8
Author(s): Vuk Batanović, Miloš Cvetanović, Boško Nikolić
Software Mentions: 4
Published: over 3 years ago

10.1186/s13321-018-0327-2

LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools
Cited by: 29
Author(s): Wahed Hemati, Alexander Mehler
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0228439

FastEmbed: Predicting vulnerability exploitation possibility based on ensemble machine learning algorithm
Cited by: 39
Author(s): Yong Fang, Yongcheng Liu, Cheng Huang, Liang Liu
Software Mentions: 4
Published: over 4 years ago

10.1186/s13321-018-0313-8

Chemlistem: chemical named entity recognition using recurrent neural networks
Cited by: 27
Author(s): Peter Corbett, John P. Boyle
Software Mentions: 4
Published: over 5 years ago

10.1186/s13326-018-0181-1

Deep learning meets ontologies: experiments to anchor the cardiovascular disease ontology in the biomedical literature
Cited by: 32
Author(s): Mercedes Argüello Casteleiro, George Demetriou, Warren Read, Maria Jesus Fernandez Prieto, Nava Maroto, Diego Maseda Fernandez, Goran Nenadić, Julie Klein, John Keane, Robert Stevens
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0220976

Word2vec convolutional neural networks for classification of news articles and tweets
Cited by: 95
Author(s): Beakcheol Jang, In-Hwan Kim, Jong Wook Kim
Software Mentions: 4
Published: over 4 years ago

10.1186/s12911-018-0702-y

Towards stroke prediction using electronic health records
Cited by: 21
Author(s): Douglas Teoh
Software Mentions: 4
Published: over 5 years ago

10.1186/s13326-016-0059-z

Active learning for ontological event extraction incorporating named entity recognition and unknown word handling
Cited by: 5
Author(s): Xu Han, Jung‐Jae Kim, Chee Keong Kwoh
Software Mentions: 4
Published: about 8 years ago

10.1186/s13326-021-00238-0

Learning adaptive representations for entity recognition in the biomedical domain
Cited by: 1
Author(s): Ivano Lauriola, Fabio Aiolli, Alberto Lavelli, Fabio Rinaldi
Software Mentions: 4
Published: about 3 years ago

10.1186/s12859-019-3284-5

Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings
Cited by: 56
Author(s): Remzi Çelebi, H. Turgut Uyar, Erkan Yasar, Özgür Gümüş, Oğuz Dikenelli, Michel Dumontier
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0221172

SimNet: Similarity-based network embeddings with mean commute time
Cited by: 9
Author(s): M. Amin Khajehnejad
Software Mentions: 4
Published: almost 5 years ago

10.3390/healthcare8020120

Integrated Natural Language Processing and Machine Learning Models for Standardizing Radiotherapy Structure Names
Cited by: 14
Author(s): Khajamoinuddin Syed, William C. Sleeman, Kevin Ivey, Michael P. Hagan, Jatinder Palta, Rishabh Kapoor, Preetam Ghosh
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0246689

Can we detect conditioned variation in political speech? two kinds of discussion and types of conversation
Cited by: 2
Author(s): Sabina Sloman, Daniel M. Oppenheimer, Simon DeDeo
Software Mentions: 4
Published: over 3 years ago

10.1093/bib/bbaa257

Biological network analysis with deep learning
Cited by: 88
Author(s): Giulia Muzio, Leslie O’Bray, Karsten Borgwardt
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-019-2914-2

edge2vec: Representation learning using edge semantics for biomedical knowledge discovery
Cited by: 33
Author(s): Zheng Gao, Gang Fu, Cheng Ouyang, Satoshi Tsutsui, Xiaozhong Liu, Jeremy J. Yang, Christopher R Gessner, Brian Foote, David Wild, Ying Ding, Qi Yu
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyg.2021.662409

Modeling Bilingual Lexical Processing Through Code-Switching Speech: A Network Science Approach
Cited by: 5
Author(s): Qi Xu, Magdalena Markowska, Martin Chodorow, Ping Li
Software Mentions: 4
Published: over 2 years ago

10.1155/2020/6248686

PmDNE: Prediction of miRNA-Disease Association Based on Network Embedding and Network Similarity Analysis
Cited by: 2
Author(s): Junyi Li, Ying Liu, Zhongqing Zhang, Bo Liu, Yadong Wang
Software Mentions: 4
Published: over 3 years ago

10.3389/frobt.2019.00053

Sentiment Analysis for Words and Fiction Characters From the Perspective of Computational (Neuro-)Poetics
Cited by: 29
Author(s): Arthur Jacobs
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41597-019-0055-0

BioWordVec, improving biomedical word embeddings with subword information and MeSH
Cited by: 269
Author(s): Yijia Zhang, Qingyu Chen, Zhihao Yang, Hongfei Lin, Zhiyong Lu
Software Mentions: 4
Published: about 5 years ago

10.3389/fnbot.2021.648374

Robot Communication: Network Traffic Classification Based on Deep Neural Network
Cited by: 1
Author(s): Ming Ge, Xiangzhan Yu, Likun Liu
Software Mentions: 4
Published: about 3 years ago

10.3389/fninf.2020.00038

Creating Neuroscientific Knowledge Organization System Based on Word Representation and Agglomerative Clustering Algorithm
Cited by: 2
Author(s): Cunqing Huangfu, Yi Zeng, Yuwei Wang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmolb.2019.00044

Integration of Random Forest Classifiers and Deep Convolutional Neural Networks for Classification and Biomolecular Modeling of Cancer Driver Mutations
Cited by: 34
Author(s): Steve Agajanian, Oluyemi Odeyemi, Gennady M. Verkhivker
Software Mentions: 4
Published: almost 5 years ago

10.3389/fgene.2020.626500

Identification of Protein Subcellular Localization With Network and Functional Embeddings
Cited by: 38
Author(s): Xiaoyong Pan, Hao Li, Tao Zeng, Zhandong Li, Lei Chen, Tao Huang, Yi Cai
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-020-03682-4

NEDD: a network embedding based method for predicting drug-disease associations
Cited by: 22
Author(s): Renyi Zhou, Zhangli Lu, Huimin Luo, Xu Ju, Min Zeng, Min Li
Software Mentions: 4
Published: over 3 years ago

10.3758/s13428-020-01406-3

subs2vec: Word embeddings from subtitles in 55 languages
Cited by: 11
Author(s): Jeroen van Paridon, Bill Thompson
Software Mentions: 4
Published: almost 4 years ago

10.3389/fpsyg.2018.00192

The Mental Representation of Polysemy across Word Classes
Cited by: 6
Author(s): Anastasiya Lopukhina, Anna Laurinavichyute, Konstantin Lopukhin, Olga Dragoy
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1006721

16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses
Cited by: 26
Author(s): Stephen Woloszynek, Zhengqiao Zhao, Jian Chen, Gail Rosen
Software Mentions: 4
Published: about 5 years ago

10.3389/frai.2021.711467

DICE: A Drug Indication Classification and Encyclopedia for AI-Based Indication Extraction
Cited by: 2
Author(s): Arjun Bhatt, Ruth Roberts, Xi Chen, Ting Li, Skylar Connor, Qais Hatim, Mike Mikailov, Weida Tong, Zhichao Liu
Software Mentions: 4
Published: almost 3 years ago

10.3389/fgene.2021.738274

iCDI-W2vCom: Identifying the Ion Channel–Drug Interaction in Cellular Networking Based on word2vec and node2vec
Cited by: 4
Author(s): Jie Zheng, Xuan Xiao, Wang-Ren Qiu
Software Mentions: 4
Published: over 2 years ago

10.1186/s12859-018-2029-1

Deep learning of mutation-gene-drug relations from the literature
Cited by: 36
Author(s): Kyubum Lee, Byounggun Kim, Yong-Hwa Choi, Sunkyu Kim, Weon Ho Shin, Sunwon Lee, Sungjoon Park, Seongsoon Kim, Aik Choon Tan, Jaewoo Kang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0242061

List-wise learning to rank biomedical question-answer pairs with deep ranking recursive autoencoders
Cited by: 4
Author(s): Yan Yan, Bowen Zhang, Xufeng Li, Zhenhan Liu
Software Mentions: 4
Published: over 3 years ago

10.1186/s12911-019-0894-9

Automated detection of altered mental status in emergency department clinical notes: a deep learning approach
Cited by: 27
Author(s): Jihad S. Obeid, Erin R. Weeda, Andrew J. Matuskowitz, Kevin Gagnon, Tami L. Crawford, Christine M. Carr, Lewis J. Frey
Software Mentions: 4
Published: almost 5 years ago

10.1093/database/baw071

A knowledge-poor approach to chemical-disease relation extraction
Cited by: 21
Author(s): Firoj Alam, Anna Corazza, Alberto Lavelli, Roberto Zanoli
Software Mentions: 4
Published: over 8 years ago

10.1093/database/bax103

Baseline and extensions approach to information retrieval of complex medical data: Poznan's approach to the bioCADDIE 2016
Cited by: 5
Author(s): Artur Cieślewicz, Jakub Dutkiewicz, Czesław Jędrzejek
Software Mentions: 4
Published: over 6 years ago

10.3390/e20120923

A Bayesian Failure Prediction Network Based on Text Sequence Mining and Clustering
Cited by: 9
Author(s): Wenbing Chang, Zhenzhong Xu, You Meng, Shenghan Zhou, Yiyong Xiao, Yang Cheng
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-019-6272-2

GO2Vec: transforming GO terms and proteins to vector representations via graph embeddings
Cited by: 15
Author(s): Xiaoshi Zhong, Rama Kaalia, Jagath C. Rajapakse
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1008489

A novel virtual screening procedure identifies Pralatrexate as inhibitor of SARS-CoV-2 RdRp and it reduces viral replication in vitro
Cited by: 40
Author(s): Haiping Zhang, Yang Yang, Junxin Li, Min Wang, Konda Mani Saravanan, Jinli Wei, Jiawei Ng, Tofazzal Hossain, Maoxuan Liu, Huiling Zhang, Xiaohu Ren, Yi Pan, Yin Peng, Yi Shi, Xiaochun Wan, Yingxia Liu, Yanjie Wei
Software Mentions: 4
Published: over 3 years ago

10.3390/e21060612

Visual Analysis of Research Paper Collections Using Normalized Relative Compression
Cited by: 1
Author(s): Pere‐Pau Vázquez
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12885-020-06931-0

Text mining in a literature review of urothelial cancer using topic model
Cited by: 11
Author(s): Hsuan-Jen Lin, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai, Charles C.N. Wang, Che‐Yi Chou
Software Mentions: 4
Published: almost 4 years ago

Projects: cran: word2vec

Papers Mentioning word2vec 413