Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-021-04055-1

https://doi.org/10.1186/s12859-021-04055-1

Juxtapose: a gene-embedding approach for comparing co-expression networks

Cited by: 8
Author(s): Katie Ovens, Farhad Maleki, B. Frank Eames, Ian McQuillan
Published: over 3 years ago

Software Mentions 10

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: node2vec
Algorithmic Framework for Representational Learning on Graphs
Papers that mentioned: 104
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
cran: word2vec
Distributed Representations of Words
Papers that mentioned: 413
pypi: gensim
Python framework for fast Vector Space Modelling
Papers that mentioned: 61
pypi: node2vec
Implementation of the node2vec algorithm
Papers that mentioned: 104
pypi: word2vec
Wrapper for Google word2vec
Papers that mentioned: 413