pypi: gensim | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0230416

The citation advantage of linking publications to research data
Cited by: 131
Author(s): Giovanni Colavizza, Iain Hrynaszkiewicz, Isla Staden, Kirstie Whitaker, Barbara McGillivray
Software Mentions: 16
Published: over 4 years ago

10.1186/s13059-021-02264-8

GeneWalk identifies relevant gene functions for a biological context using network representation learning
Cited by: 26
Author(s): Robert Ietswaart, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger, L. Stirling Churchman
Software Mentions: 14
Published: almost 4 years ago

10.3390/ijerph17031093

Teleconsultations between Patients and Healthcare Professionals in Primary Care in Catalonia: The Evaluation of Text Classification Algorithms Using Supervised Machine Learning
Cited by: 14
Author(s): Francesc López Seguí, Ricardo Ander Egg Aguilar, Gabriel de Maeztu, Anna García‐Altés, Francesc García Cuyàs, Sandra M. Walsh, Marta Sagarra Castro, Josep Vidal-Alaball
Software Mentions: 11
Published: almost 5 years ago

10.1186/s12859-021-04055-1

Juxtapose: a gene-embedding approach for comparing co-expression networks
Cited by: 8
Author(s): Katie Ovens, Farhad Maleki, B. Frank Eames, Ian McQuillan
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0224452

Comparative analysis on Facebook post interaction using DNN, ELM and LSTM
Cited by: 8
Author(s): Sabih Ahmad Khan, Hsien-Tsung Chang
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pcbi.1008724

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships
Cited by: 81
Author(s): Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, F. Diblen, Simon Rogers, Justin J. J. van der Hooft
Software Mentions: 9
Published: almost 4 years ago

10.1186/s12859-021-04093-9

Machine learning predicts nucleosome binding modes of transcription factors
Cited by: 1
Author(s): K C Kishan, Sridevi K. Subramanya, Rui Li, Feng Cui
Software Mentions: 9
Published: over 3 years ago

10.1186/s12870-019-1693-2

A k-mer grammar analysis to uncover maize regulatory architecture
Cited by: 32
Author(s): Maria Katherine Mejía‐Guerra, Edward S. Buckler
Software Mentions: 8
Published: over 5 years ago

10.1186/s12859-019-3071-3

A hybrid deep learning framework for bacterial named entity recognition with domain features
Cited by: 8
Author(s): Xusheng Liu, Chengcheng Fu, Rugang Zhong, Duo Zhong, Tingting He, Xingpeng Jiang
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0246464

Is it feasible to detect FLOSS version release events from textual messages? A case study on Stack Overflow
Cited by: 0
Author(s): Artur Sokolovsky, Thomas Groß, Jaume Bacardit
Software Mentions: 6
Published: almost 4 years ago

10.1007/s41109-020-00257-3

Evolving network representation learning based on random walks
Cited by: 8
Author(s): Farzaneh Heidari, Manos Papagelis
Software Mentions: 5
Published: over 4 years ago

10.2196/24073

A Natural Language Processing–Based Virtual Patient Simulator and Intelligent Tutoring System for the Clinical Diagnostic Process: Simulator Development and Case Study
Cited by: 14
Author(s): Raffaello Furlan, Mauro Gatti, Roberto Menè, Dana Shiffer, Chiara Marchiori, Alessandro Giaj Levra, Vincenzo Saturnino, Enrico Brunetta, Franca Dipaola
Software Mentions: 5
Published: over 3 years ago

10.3389/frai.2020.536086

Attitudes Toward Multilingualism in Luxembourg. A Comparative Analysis of Online News Comments and Crowdsourced Questionnaire Data
Cited by: 5
Author(s): Christoph Purschke
Software Mentions: 5
Published: about 4 years ago

10.3389/frai.2020.584784

Using Word Embeddings to Learn a Better Food Ontology
Cited by: 7
Author(s): Jason Youn, Tarini Naravane, Ilias Tagkopoulos
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12911-017-0556-8

Medical subdomain classification of clinical notes using a machine learning-based natural language processing approach
Cited by: 111
Author(s): Wei-Hung Weng, Kavishwar B. Wagholikar, Alexa T. McCray, Peter Szolovits, Henry C. Chueh
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0194136

Emotion computing using Word Mover’s Distance features based on Ren_CECps
Cited by: 11
Author(s): Fuji Ren, Ning Liu
Software Mentions: 5
Published: over 6 years ago

10.3390/ijerph16234804

Finding Users’ Voice on Social Media: An Investigation of Online Support Groups for Autism-Affected Users on Facebook
Cited by: 33
Author(s): Yuehua Zhao, Jin Zhang, Min Wu
Software Mentions: 4
Published: almost 5 years ago

10.2196/26953

Tweet Topics and Sentiments Relating to COVID-19 Vaccination Among Australian Twitter Users: Machine Learning Analysis
Cited by: 130
Author(s): Stephen Wai Hang Kwok, Sai Kumar Vadde, Guanjin Wang
Software Mentions: 4
Published: over 3 years ago

10.3389/fninf.2020.00038

Creating Neuroscientific Knowledge Organization System Based on Word Representation and Agglomerative Clustering Algorithm
Cited by: 2
Author(s): Cunqing Huangfu, Yi Zeng, Yuwei Wang
Software Mentions: 4
Published: over 4 years ago

10.2196/26187

Tele–Mental Health for Reaching Out to Patients in a Time of Pandemic: Provider Survey and Meta-analysis of Patient Satisfaction
Cited by: 19
Author(s): Raffaele Mazziotti, Grazia Rutigliano
Software Mentions: 4
Published: over 3 years ago

10.2196/22422

Deep Neural Network for Reducing the Screening Workload in Systematic Reviews for Clinical Guidelines: Algorithm Validation Study
Cited by: 9
Author(s): Tomohide Yamada, Daisuke Yoneoka, Yuta Hiraike, Kimihiro Hino, Hiroyoshi Toyoshiba, Akira Shishido, Hisashi Noma, Nobuhiro Shojima, Toshimasa Yamauchi
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0242050

A versatile framework for resource-limited sentiment articulation, annotation, and analysis of short texts
Cited by: 8
Author(s): Vuk Batanović, Miloš Cvetanović, Boško Nikolić
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pcbi.1006721

16S rRNA sequence embeddings: Meaningful numeric feature representations of nucleotide sequences that are convenient for downstream analyses
Cited by: 26
Author(s): Stephen Woloszynek, Zhengqiao Zhao, Jian Chen, Gail Rosen
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0188941

Forecasting influenza-like illness dynamics for military populations using neural networks and social media
Cited by: 76
Author(s): Svitlana Volkova, Ellyn Ayton, Katherine Porterfield, Courtney D. Corley
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12859-020-03673-5

Biomedical document triage using a hierarchical attention-based capsule network
Cited by: 7
Author(s): Jian Wang, Mengying Li, Qishuai Diao, Hongfei Lin, Zhihao Yang, YiJia Zhang
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-018-5370-x

Gene2vec: distributed representation of genes based on co-expression
Cited by: 85
Author(s): Jingcheng Du, Peilin Jia, Yulin Dai, Cui Tao, Zhongming Zhao, Degui Zhi
Software Mentions: 3
Published: almost 6 years ago

10.1186/1472-6947-15-S2-S2

Care episode retrieval: distributional semantic models for information retrieval in the clinical domain
Cited by: 22
Author(s): Hans Moen, Filip Ginter, Erwin Marsi, Laura‐Maria Peltonen, Tapio Salakoski, Sanna Salanterä
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0244839

A scientometric overview of CORD-19
Cited by: 45
Author(s): Giovanni Colavizza, Rodrigo Costas, Vincent Traag, Nees Jan van Eck, Thed N. van Leeuwen, Ludo Waltman
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0234880

The proximity of ideas: An analysis of patent text using machine learning
Cited by: 12
Author(s): Shuijuan Feng
Software Mentions: 3
Published: over 4 years ago

10.1007/s41109-021-00358-7

Dank or not? Analyzing and predicting the popularity of memes on Reddit
Cited by: 9
Author(s): Katelyn Barnes, Tiernon Riesenmy, Minh Duc Trinh, Eli Lleshi, Nóra Balogh, Roland Molontay
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0204938

“Is a picture really worth a thousand words?”: A case study on classifying user attributes on Instagram
Cited by: 21
Author(s): Junho Song, Kyungsik Han, Dongwon Lee, Sang Wook Kim
Software Mentions: 3
Published: about 6 years ago

10.1093/database/baaa026

UPCLASS: a deep learning-based classifier for UniProtKB entry publications
Cited by: 6
Author(s): Douglas Teodoro, Julien Knafou, Nona Naderi, Emilie Pasche, Julien Gobeill, Cecilia N. Arighi, Patrick Ruch
Software Mentions: 3
Published: almost 5 years ago

10.2196/jmir.6676

MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers
Cited by: 5
Author(s): Alexis Allot, Kirsley Chennen, Yannis Nevers, Laetitia Poidevin, Arnaud Kress, Raymond Ripp, Julie Thompson, Olivier Poch, Odile Lecompte
Software Mentions: 3
Published: over 7 years ago

10.2196/jmir.6045

Characterizing Twitter Discussions About HPV Vaccines Using Topic Modeling and Community Detection
Cited by: 145
Author(s): Didi Surian, Dat Quoc Nguyen, Georgina Kennedy, Mark Johnson, Enrico Coiera, Adam G. Dunn
Software Mentions: 3
Published: about 8 years ago

10.2196/22635

Natural Language Processing Reveals Vulnerable Mental Health Support Groups and Heightened Health Anxiety on Reddit During COVID-19: Observational Study
Cited by: 174
Author(s): Daniel M. Low, Laurie Rumker, Tanya Talkar, John Torous, Guillermo A. Cecchi, Samik Ghosh
Software Mentions: 3
Published: about 4 years ago

10.3389/frai.2021.654154

Dissemination Dynamics of Receding Words: A Diachronic Case Study of Whom
Cited by: 0
Author(s): Axel Bohmann, Martin Bohmann, Lars Hinrichs
Software Mentions: 2
Published: over 3 years ago

10.3389/fpsyg.2014.00385

Using a high-dimensional graph of semantic space to model relationships among words
Cited by: 11
Author(s): Alice F. Jackson, Donald J. Bolger
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0231529

Representation of the spatio-temporal narrative of The Tale of Li Wa李娃传
Cited by: 0
Author(s): Zhaoyi Ma, Jie He, Shuaishuai Liu
Software Mentions: 2
Published: over 4 years ago

10.1093/gigascience/giaa032

Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities
Cited by: 10
Author(s): Zhen-Hao Guo, Zhu‐Hong You, Yanbin Wang, De-Shuang Huang, Hai-Cheng Yi, Zhan-Heng Chen
Software Mentions: 2
Published: over 4 years ago

10.3390/s21175924

Schizophrenia Detection Using Machine Learning Approach from Social Media Content
Cited by: 23
Author(s): Yi Ji Bae, Midan Shim, Won Hee Lee
Software Mentions: 2
Published: about 3 years ago

10.1038/s41398-020-01104-w

Hard for humans, hard for machines: predicting readmission after psychiatric hospitalization using narrative notes
Cited by: 8
Author(s): William Boag, Olga Kovaleva, Thomas H. McCoy, Anna Rumshisky, Peter Szolovits, Roy H. Perlis
Software Mentions: 2
Published: almost 4 years ago

10.2196/17650

Automatic Construction of a Depression-Domain Lexicon Based on Microblogs: Text Mining Study
Cited by: 12
Author(s): Genghao Li, Bing Li, Langlin Huang, Sibing Hou
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0190926

Drug drug interaction extraction from the literature using a recursive neural network
Cited by: 72
Author(s): Sangrak Lim, Kyubum Lee, Jaewoo Kang
Software Mentions: 2
Published: almost 7 years ago

10.2196/26527

“Thought I’d Share First” and Other Conspiracy Theory Tweets from the COVID-19 Infodemic: Exploratory Study
Cited by: 46
Author(s): Dax Gerts, Courtney D Shelley, Nidhi Parikh, Travis Pitts, Chrysm Watson Ross, Geoffrey Fairchild, Nidia Yadria Vaquera Chavez, Ashlynn R. Daughton
Software Mentions: 2
Published: over 3 years ago

10.2196/publichealth.7726

Detecting Novel and Emerging Drug Terms Using Natural Language Processing: A Social Media Corpus Study
Cited by: 25
Author(s): Sean Simpson, Nikki Adams, Claudia Brugman, Thomas Conners
Software Mentions: 2
Published: almost 7 years ago

10.2196/jmir.5780

Identifying Topics for E-Cigarette User-Generated Contents: A Case Study From Multiple Social Media Platforms
Cited by: 75
Author(s): Yongcheng Zhan, Ruoran Liu, Qiudan Li, Scott J. Leischow, Daniel Zeng
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12859-018-2197-z

Automatic extraction of informal topics from online suicidal ideation
Cited by: 21
Author(s): Reilly N. Grant, David Kucher, Ana M. León, Jonathan Gemmell, Daniela Raicu, Samah Jamal Fodeh
Software Mentions: 2
Published: over 6 years ago

10.1140/epjds/s13688-018-0176-2

Home is where the ad is: online interest proxies housing demand
Cited by: 7
Author(s): Marco Pangallo, Michele Loberto
Software Mentions: 2
Published: about 6 years ago

10.1007/s10278-019-00234-y

Toward Complete Structured Information Extraction from Radiology Reports Using Machine Learning
Cited by: 36
Author(s): Jackson Steinkamp, Charles M. Chambers, Darco Lalevic, Hanna M. Zafar, Tessa S. Cook
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-67895-6

Ensuring the spread of referral marketing campaigns: a quantitative treatment
Cited by: 4
Author(s): Sayantari Ghosh, Kumar Gaurav, Sumanta Bhattacharya, Yatindra Nath Singh
Software Mentions: 2
Published: over 4 years ago

10.3390/s21124220

An Improved Vulnerability Exploitation Prediction Model with Novel Cost Function and Custom Trained Word Vector Embedding
Cited by: 4
Author(s): Mohammad Shamsul Hoque, Norziana Jamil, Nowshad Amin, Kwok‐Yan Lam
Software Mentions: 2
Published: over 3 years ago

10.1093/jamiaopen/ooz057

Learning unsupervised contextual representations for medical synonym discovery
Cited by: 11
Author(s): Elliot Schumacher, Mark Dredze
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0239441

Public discourse and sentiment during the COVID 19 pandemic: Using Latent Dirichlet Allocation for topic modeling on Twitter
Cited by: 186
Author(s): Jia Xue, Junxiang Chen, Chen Chen, Chengda Zheng, Sijia Li, Tingshao Zhu
Software Mentions: 1
Published: about 4 years ago

10.1038/sdata.2018.104

PubMed Phrases, an open set of coherent phrases for searching biomedical literature
Cited by: 13
Author(s): Sun Kim, Lana Yeganova, Donald C. Comeau, W. John Wilbur, Zhiyong Lu
Software Mentions: 1
Published: over 6 years ago

10.3390/e22111303

Applying Text Analytics for Studying Research Trends in Dependability
Cited by: 8
Author(s): Miriam Louise Carnot, Jorge Bernardino, Nuno Laranjeiro, Hugo Gonçalo Oliveira
Software Mentions: 1
Published: about 4 years ago

10.1111/cogs.12690

Modeling the Structure and Dynamics of Semantic Processing
Cited by: 11
Author(s): Armand Stefan Rotaru, Gabriella Vigliocco, Stefan Frank
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0221639

Towards a top-down approach for an automatic discourse analysis for Basque: Segmentation and Central Unit detection tool
Cited by: 3
Author(s): Aitziber Atutxa, Kepa Bengoetxea, Arantza Díaz de Ilarraza, Mikel Iruskieta
Software Mentions: 1
Published: about 5 years ago

10.1186/s12911-020-1106-3

Identifying diagnosis evidence of cardiogenic stroke from Chinese echocardiograph reports
Cited by: 2
Author(s): Qin Lu, Xiaowei Xu, Lingling Ding, Zixiao Li, Jiao Li
Software Mentions: 1
Published: over 4 years ago

10.2196/22184

Lifelog Data-Based Prediction Model of Digital Health Care App Customer Churn: Retrospective Observational Study
Cited by: 10
Author(s): Hongwook Kwon, Ho Heon Kim, Jae Il An, Jae-Ho Lee, Yu Rang Park
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12885-021-08438-8

Factors to improve distress and fatigue in Cancer survivorship; further understanding through text analysis of interviews by machine learning
Cited by: 3
Author(s): Kyung Mi Yang, Jina Kim, Mison Chun, Mi Sun Ahn, Eunae Chon, Jinju Park, Mi-Jin Jung
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: gensim

Papers Mentioning gensim 61