Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: networkx
https://packages.ecosyste.ms/registries/pypi.org/packages/networkx
Python package for creating and manipulating graphs and networks
85 versions
Latest release: about 1 year ago
2,220 dependent packages
31,374,924 downloads last month
Papers Mentioning networkx 110
10.7554/eLife.55913
An image-based data-driven analysis of cellular architecture in a developing tissueCited by: 22
Author(s): Jonas Hartmann, Mie Wong, Elisa Cristina de Proença Rodrigues Gallo, Darren Gilmour
Software Mentions: 14
Published: over 4 years ago
10.1186/s13059-021-02264-8
GeneWalk identifies relevant gene functions for a biological context using network representation learningCited by: 26
Author(s): Robert Ietswaart, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger, L. Stirling Churchman
Software Mentions: 14
Published: almost 4 years ago
10.1186/s13321-020-00455-2
spyrmsd: symmetry-corrected RMSD calculations in PythonCited by: 23
Author(s): Rocco Meli, Philip C. Biggin
Software Mentions: 13
Published: about 4 years ago
10.1186/s12859-021-04057-z
Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing dataCited by: 21
Author(s): Hao Chen, Yan Lu, Dongsheng Lu, Shuhua Xu
Software Mentions: 13
Published: over 3 years ago
10.1371/journal.pone.0225900
PyRates—A Python framework for rate-based neural simulationsCited by: 10
Author(s): Richard Gast, Daniel Rose, Christoph Salomon, Harald E. Möller, Nikolaus Weiskopf, Thomas R. Knösche
Software Mentions: 12
Published: almost 5 years ago
10.1128/mSystems.00903-19
manta: a Clustering Algorithm for Weighted Ecological NetworksCited by: 7
Author(s): Lisa Röttjers, Karoline Faust
Software Mentions: 12
Published: over 4 years ago
10.1186/s41044-019-0043-6
A substrate for modular, extensible data-visualizationCited by: 6
Author(s): Jordan Matelsky, Joseph Downs, Hannah Cowley, Brock Wester, William Gray-Roncal
Software Mentions: 11
Published: over 4 years ago
10.1186/s13062-018-0214-9
Predicting clinical outcome of neuroblastoma patients using an integrative network-based approachCited by: 13
Author(s): Léon-Charles Tranchevent, Petr V. Nazarov, Tony Kaoma, Georges Pierre Schmartz, Arnaud Muller, Sang Yoon Kim, Jagath C. Rajapakse, Francisco Azuaje
Software Mentions: 10
Published: almost 7 years ago
10.1186/s12920-019-0628-y
A deep neural network approach to predicting clinical outcomes of neuroblastoma patientsCited by: 14
Author(s): Léon-Charles Tranchevent, Francisco Azuaje, Jagath C. Rajapakse
Software Mentions: 10
Published: almost 5 years ago
10.1029/2019EA001004
Open‐Source Software Analysis Tool to Investigate Space Plasma Turbulence and Nonlinear DYNamics (ODYN)Cited by: 6
Author(s): E. Teodorescu, Marius Echim
Software Mentions: 10
Published: over 4 years ago
10.1016/j.cell.2021.07.017
Whole-body integration of gene expression and single-cell morphologyCited by: 59
Author(s): Hernando Vergara, Constantin Pape, Kimberly Meechan, Valentyna Zinchenko, Christel Genoud, Adrian Wanner, Kevin Nzumbi Mutemi, Benjamin Titze, Rachel Templin, Paola Bertucci, Oleg Simakov, Wiebke Dürichen, Pedro Machado, Emily L. Savage, Lothar Schermelleh, Yannick Schwab, Rainer W. Friedrich, Anna Kreshuk, Christian Tischer, Detlev Arendt
Software Mentions: 10
Published: about 3 years ago
10.3390/md18100515
Applying a Chemogeographic Strategy for Natural Product Discovery from the Marine Cyanobacterium Moorena bouilloniiCited by: 6
Author(s): Christopher A. Leber, C. Benjamin Naman, Lena Keller, Jehad Almaliti, Eduardo J. E. Caro‐Diaz, Evgenia Glukhov, V. Joseph, Sajeevan Thavarool Puthiyedathu, Andres Joshua Reyes, Jason S. Biggs, Te Li, Ye Yuan, Shan He, Xiaojun Yan, William H. Gerwick
Software Mentions: 10
Published: about 4 years ago
10.1093/bioinformatics/btaa201
Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMFCited by: 37
Author(s): Meenakshi Venkatasubramanian, Kashish Chetal, Daniel Schnell, Gowtham Atluri, Nathan Salomonis
Software Mentions: 10
Published: over 4 years ago
10.1126/sciadv.abg1921
Environmental vulnerability of the global ocean epipelagic plankton community interactomeCited by: 47
Author(s): Samuel Chaffron, Erwan Delage, Marko Budinich, Damien Vintache, Nicolas Henry, Charlotte Nef, Mathieu Ardyna, Ahmed A. Zayed, Pedro C. Junger, Pierre E. Galand, Connie Lovejoy, Alison E. Murray, Hugo Sarmento, Tara Oceans Coordinators, Silvia G. Acinas, Marcel Babin, Daniele Iudicone, Olivier Jaillon, Eric Karsenti, Patrick Wincker, Lee Karp‐Boss, Matthew B. Sullivan, Chris Bowler, Colomban de Vargas, Damien Eveillard
Software Mentions: 9
Published: about 3 years ago
10.1371/journal.pone.0078009
Frequency Response and Gap Tuning for Nonlinear Electrical Oscillator NetworksCited by: 0
Author(s): Harish S. Bhat, Garnet J. Vaz
Software Mentions: 9
Published: about 11 years ago
10.1186/s12859-014-0408-9
Kiwi: a tool for integration and visualization of network topology and gene-set analysisCited by: 12
Author(s): Leif Väremo, Francesco Gatto, Jens Nielsen
Software Mentions: 9
Published: almost 10 years ago
10.1371/journal.pcbi.1007832
Flux-based hierarchical organization of Escherichia coli’s metabolic networkCited by: 2
Author(s): Semidán Robaina-Estévez, Zoran Nikoloski
Software Mentions: 8
Published: over 4 years ago
10.7554/eLife.66747
Mapping single-cell atlases throughout Metazoa unravels cell type evolutionCited by: 98
Author(s): Alexander J. Tarashansky, Jacob M. Musser, Margarita Khariton, Pengyang Li, Detlev Arendt, Stephen R. Quake, Bo Wang
Software Mentions: 8
Published: over 3 years ago
10.1107/S2059798318004576
<i>KAMO</i>: towards automated data processing for microcrystalsCited by: 174
Author(s): Keitaro Yamashita, Kunio Hirata, Masaki Yamamoto
Software Mentions: 8
Published: over 6 years ago
10.7554/eLife.53281
Feedback inhibition and its control in an insect olfactory circuitCited by: 8
Author(s): Subhasis Ray, Zane Aldworth, Mark Stopfer
Software Mentions: 7
Published: over 4 years ago
10.1186/s12864-017-4268-3
GHOST: global hepatitis outbreak and surveillance technologyCited by: 32
Author(s): Atkinson G. Longmire, Seth Sims, Inna Rytsareva, David S. Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, Yury Khudyakov
Software Mentions: 7
Published: almost 7 years ago
10.1038/s41598-021-94105-8
Sublinear domination and core–periphery networksCited by: 1
Author(s): Marios Papachristou
Software Mentions: 6
Published: over 3 years ago
10.3389/fimmu.2018.00224
Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune RepertoiresCited by: 146
Author(s): Enkelejda Miho, Alexander Yermanos, Cédric R. Weber, Christoph T. Berger, Sai T. Reddy, Victor Greiff
Software Mentions: 6
Published: over 6 years ago
10.1186/s12920-019-0581-9
The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brainCited by: 26
Author(s): Filisia Agus, Diego Crespo, Richard H. Myers, Adam Labadorf
Software Mentions: 6
Published: about 5 years ago
10.3389/fninf.2014.00034
Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimagesCited by: 45
Author(s): Juan Nunez-Iglesias, Ryan Kennedy, Stephen M. Plaza, Anirban Chakraborty, William T. Katz
Software Mentions: 6
Published: over 10 years ago
10.1371/journal.pone.0187091
DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction networkCited by: 43
Author(s): Divya Mistry, Roger P. Wise, Julie A. Dickerson
Software Mentions: 6
Published: almost 7 years ago
10.1186/1751-0473-3-10
Flow: Statistics, visualization and informatics for flow cytometryCited by: 11
Author(s): Jacob Frelinger, Thomas B. Kepler, Cliburn Chan
Software Mentions: 6
Published: over 16 years ago
10.1186/s12859-018-2092-7
An interpretable framework for clustering single-cell RNA-Seq datasetsCited by: 46
Author(s): Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse
Software Mentions: 5
Published: over 6 years ago
10.1186/s12859-020-03769-y
C3: connect separate connected components to form a succinct disease moduleCited by: 6
Author(s): Bingbo Wang, Jie Hu, Yajun Wang, Chenxing Zhang, Yuanjun Zhou, Liang Yu, Guo Xia-zhen, Lin Gao, Yunru Chen
Software Mentions: 5
Published: about 4 years ago
10.1186/s12859-019-3004-1
mycelyso – high-throughput analysis of Streptomyces mycelium live cell imaging dataCited by: 3
Author(s): Christian Carsten Sachs, Joachim Koepff, Wolfgang Wiechert, Alexander Grünberger, Katharina Nöh
Software Mentions: 5
Published: about 5 years ago
10.1186/s12864-018-4704-z
OMGene: mutual improvement of gene models through optimisation of evolutionary conservationCited by: 6
Author(s): Michael Dunne, Steven Kelly
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0252862
Approaches to measure class importance in Knowledge GraphsCited by: 2
Author(s): Daniel Fernández-Álvarez, Johannes Frey, José Emilio Labra Gayo, Daniel Gayo-Avello, Sebastian Hellmann
Software Mentions: 5
Published: over 3 years ago
10.1186/s13059-020-02247-1
Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequencesCited by: 22
Author(s): Caroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky
Software Mentions: 5
Published: almost 4 years ago
10.1093/gigascience/gix111
ProphTools: general prioritization tools for heterogeneous biological networksCited by: 10
Author(s): Carmen Navarro, Víctor R. Martínez, Armando Blanco, Carlos Cano
Software Mentions: 5
Published: almost 7 years ago
10.1038/s41598-017-06355-0
Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway ActivityCited by: 5
Author(s): Prashanna Balaji Venkatasubramanian, Gamze Toydemir, Nicole de Wit, Edoardo Saccenti, Vítor A. P. Martins dos Santos, Peter van Baarlen, Jerry M. Wells, María Suárez-Diez, Jurriaan J. Mes
Software Mentions: 5
Published: over 7 years ago
10.1038/s41598-020-77364-9
A potential energy and mutual information based link prediction approach for bipartite networksCited by: 7
Author(s): Purushottam Kumar, Dolly Sharma
Software Mentions: 5
Published: almost 4 years ago
10.1128/mBio.02691-19
Modeling of the Coral Microbiome: the Influence of Temperature and Microbial NetworkCited by: 25
Author(s): Laís Farias Oliveira Lima, Maya Weissman, Micheal Reed, Bhavya Papudeshi, Amanda T. Alker, Megan M. Morris, Robert A. Edwards, Samantha J. de Putron, Naveen K. Vaidya, Elizabeth A. Dinsdale
Software Mentions: 5
Published: over 4 years ago
10.1128/mSystems.00913-20
Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation MechanismsCited by: 23
Author(s): Nicole Pearcy, Yue Hu, Michelle Baker, Alexandre Maciel-Guerra, Ning Xue, Wei Wang, Jasmeet Kaler, Zong–Gen Peng, Fengqin Li, Tania Dottorini
Software Mentions: 5
Published: about 3 years ago
10.7554/eLife.71393
Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodiesCited by: 18
Author(s): Angela M Phillips, Katherine R. Lawrence, Alief Moulana, Thomas Dupic, Jeffrey S. Chang, Milo S. Johnson, Ivana Cvijović, Thierry Mora, Aleksandra M. Walczak, Michael M. Desai
Software Mentions: 5
Published: about 3 years ago
10.1186/s12859-015-0570-8
Domain similarity based orthology detectionCited by: 12
Author(s): Tristan Bitard‐Feildel, Carsten Kemena, Jenny M. Greenwood, Erich Bornberg‐Bauer
Software Mentions: 4
Published: over 9 years ago
10.1186/s12863-016-0388-z
Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organismsCited by: 40
Author(s): Katja Reichel, Jean-Pierre Masson, Florent Malrieu, Sophie Arnaud‐Haond, Solenn Stoeckel
Software Mentions: 4
Published: over 8 years ago
10.1074/mcp.O117.067728
Covariation of Peptide Abundances Accurately Reflects Protein Concentration DifferencesCited by: 62
Author(s): Bo Zhang, Mohammad Pirmoradian, Roman A. Zubarev, Lukas Käll
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pcbi.1008003
Biological network growth in complex environments: A computational frameworkCited by: 6
Author(s): Torsten Johann Paul, Philip Kollmannsberger
Software Mentions: 4
Published: almost 4 years ago
10.1186/s13015-015-0061-5
Interpretation and approximation tools for big, dense Markov chain transition matrices in population geneticsCited by: 7
Author(s): Katja Reichel, Valentin Bahier, Cédric Midoux, Nicolas Parisey, Jean-Pierre Masson, Solenn Stoeckel
Software Mentions: 4
Published: almost 9 years ago
10.7554/eLife.54082
Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacityCited by: 10
Author(s): Tarun Kumar, Leo Blondel, Cassandra G. Extavour
Software Mentions: 4
Published: about 4 years ago
10.1186/s12859-019-3076-y
DeepEP: a deep learning framework for identifying essential proteinsCited by: 36
Author(s): Min Zeng, Min Li, Fang‐Xiang Wu, Yaohang Li, Yi Pan
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-020-78352-9
Eight years of homicide evolution in Monterrey, Mexico: a network approachCited by: 1
Author(s): Rodrigo Dorantes-Gilardi, Diana García-Cortés, Hiram Hernández-Ramos, Jesús Espinal-Enríquez
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-020-74775-6
A digital reconstruction of the 1630–1631 large plague outbreak in VeniceCited by: 6
Author(s): Gianrocco Lazzari, Giovanni Colavizza, Fabio Bortoluzzi, Davide Drago, Andrea Erboso, Francesca Zugno, Frédé́ric Kaplan, Marcel Salathé
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-020-67523-3
Horseback riding pathways and harbors at the beginning of the colonial era in MexicoCited by: 1
Author(s): Igor Lugo, Martha G. Alatriste‐Contreras
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-019-50790-0
Signal flow control of complex signaling networksCited by: 6
Author(s): Daewon Lee, Kwang-Hyun Cho
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pcbi.1004478
Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial GenomeCited by: 37
Author(s): Marco Galardini, Matteo Brilli, Giulia Spini, Matteo Rossi, Bianca Roncaglia, Aïda Bani, Chiancianesi Manuela, Marco Moretto, Kristof Engelen, Giovanni Bacci, Francesco Pini, Emanuele G. Biondi, Marco Bazzicalupo, Alessio Mengoni
Software Mentions: 4
Published: about 9 years ago
10.3389/fgene.2021.617505
Gene-Microbiome Co-expression Networks in Colon CancerCited by: 5
Author(s): Irving Uriarte-Navarrete, Enrique Hernández‐Lemus, Guillermo de Anda-Jáuregui
Software Mentions: 3
Published: over 3 years ago
10.12688/f1000research.2-130.v3
An a posteriori measure of network modularityCited by: 5
Author(s): Timothée Poisot
Software Mentions: 3
Published: almost 11 years ago
10.1186/s40478-018-0574-5
RNA binding proteins co-localize with small tau inclusions in tauopathyCited by: 99
Author(s): Brandon F. Maziuk, Daniel J. Apicco, Anna Lourdes Cruz, Lulu Jiang, Peter E.A. Ash, Edroaldo Lummertz da Rocha, Cheng Zhang, Wen H. Yu, John D. Leszyk, Jose F. Abisambra, Li Hu, Benjamin Wolozin
Software Mentions: 3
Published: over 6 years ago
10.7717/peerj-cs.679
Approximate spectral clustering using both reference vectors and topology of the network generated by growing neural gasCited by: 1
Author(s): Kazuhisa Fujita
Software Mentions: 3
Published: about 3 years ago
10.7717/peerj-cs.262
Legal document similarity: a multi-criteria decision-making perspectiveCited by: 10
Author(s): Rupali Wagh, D. K. Anand
Software Mentions: 3
Published: over 4 years ago
10.7717/peerj-cs.389
FNG-IE: an improved graph-based method for keyword extraction from scholarly big-dataCited by: 5
Author(s): Noman Tahir, Muhammad Asif, Shahbaz Ahmad, Muhammad Sheraz Arshad Malik, Hanan Aljuaid, Muhammad Arif Butt, Mobashar Rehman
Software Mentions: 3
Published: over 3 years ago
10.1093/gigascience/giaa029
Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattleCited by: 40
Author(s): Edward S. Rice, Sergey Koren, Arang Rhie, Michael P. Heaton, Theodore S. Kalbfleisch, Timothy Hardy, Peter H. Hackett, Derek M. Bickhart, Benjamin D. Rosen, B. L. Vander Ley, Nicholas Maurer, Edward Green, Adam M. Phillippy, Jessica L. Petersen, Timothy P. L. Smith
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0226481
Connectivity differences between Gulf War Illness (GWI) phenotypes during a test of attentionCited by: 4
Author(s): Tomas Clarke, Jessie D. Jamieson, Patrick S. Malone, Rakib U. Rayhan, Stuart D. Washington, John W. VanMeter, James N. Baraniuk
Software Mentions: 3
Published: almost 5 years ago
10.3389/fphar.2020.00187
Repositioning of Hypoglycemic Drug Linagliptin for Cancer TreatmentCited by: 8
Author(s): Yong Li, Yiqun Li, Dengke Li, Kaiming Li, Quan Zhengyang, Ziyi Wang, Zhenxiao Sun
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-018-23931-0
Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilienceCited by: 98
Author(s): Dinka Mandaković, Claudia Rojas, Jonathan Maldonado, Mauricio Latorre, Dante Travisany, Erwan Delage, Audrey Bihouée, Géraldine Jean, Francisco Javier Mato Díaz, Beatriz Fernández-Gómez, Pablo J. Cabrera, Alexis Gaete, Claudio Latorre, Rodrigo A. Gutiérrez, Alejandro Maass, Verónica Cambiazo, Sergio A. Navarrete, Damien Eveillard, Maurício González
Software Mentions: 3
Published: over 6 years ago
10.3389/fgene.2017.00165
New Tools in Orthology Analysis: A Brief Review of Promising PerspectivesCited by: 55
Author(s): Bruno Thiago de Lima Nichio, Jeroniza Nunes Marchaukoski, Roberto Tadeu Raittz
Software Mentions: 3
Published: about 7 years ago
10.1021/acssynbio.0c00318
Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial ColoniesCited by: 11
Author(s): Salva Duran-Nebreda, Jordi Pla, Blai Vidiella, Jordi Piñero, Núria Conde-Pueyo, Ricard V. Solé
Software Mentions: 3
Published: almost 4 years ago
10.3897/CompCytogen.v12i4.31015
Pilot satellitome analysis of the model plant, Physcomitrella patens, revealed a transcribed and high-copy IGS related tandem repeatCited by: 20
Author(s): Ilya Kirov, Marina Gilyok, Andrey Knyazev, Igor Fesenko
Software Mentions: 3
Published: almost 6 years ago
10.1186/s13062-015-0058-5
Design principles for cancer therapy guided by changes in complexity of protein-protein interaction networksCited by: 25
Author(s): Sébastien Benzekry, Jack A. Tuszyński, Edward A. Rietman, Giannoula Klement
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pcbi.1009375
Reconstructing contact network structure and cross-immunity patterns from multiple infection historiesCited by: 0
Author(s): Christian Selinger, Samuel Alizon
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pcbi.1004468
Comprehensive Meta-analysis of Ontology Annotated 16S rRNA Profiles Identifies Beta Diversity Clusters of Environmental Bacterial CommunitiesCited by: 21
Author(s): Andreas Henschel, Muhammad Zohaib Anwar, Vimitha Manohar
Software Mentions: 2
Published: about 9 years ago
10.1186/s12917-016-0652-5
A descriptive analysis of the growth of unrecorded interactions amongst cattle-raising premises in Scotland and their implications for disease spreadCited by: 4
Author(s): Jessica Enright, Rowland R. Kao
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0041430
Mapping the Mutual Information Network of Enzymatic Families in the Protein Structure to Unveil Functional FeaturesCited by: 34
Author(s): Daniel Aguilar, Baldo Oliva, Cristina Marino-Buslje
Software Mentions: 2
Published: over 12 years ago
10.3389/fdata.2021.666712
Functional Structure in Production NetworksCited by: 7
Author(s): Carolina Mattsson, Frank W. Takes, Eelke M. Heemskerk, Cees Diks, Gert Buiten, Albert Faber, P.M.A. Sloot
Software Mentions: 2
Published: over 3 years ago
10.3389/fmicb.2019.02389
Fine-Scale Biogeography and the Inference of Ecological Interactions Among Neutrophilic Iron-Oxidizing Zetaproteobacteria as Determined by a Rule-Based Microbial NetworkCited by: 6
Author(s): Katherine Duchinski, Craig L. Moyer, Kyle R. Hager, Heather Fullerton
Software Mentions: 2
Published: about 5 years ago
10.3389/fmicb.2021.739844
Rhizosphere Microbial Communities Are Significantly Affected by Optimized Phosphorus Management in a Slope Farming SystemCited by: 12
Author(s): Qianxin Deng, Tong Zhang, Deti Xie, Yang Yong
Software Mentions: 2
Published: about 3 years ago
10.3389/fninf.2021.727859
Fiber Clustering Acceleration With a Modified Kmeans++ Algorithm Using Data ParallelismCited by: 7
Author(s): Isaac Goicovich, Paulo Olivares, Claudio Román, Andrea Vázquez, Cyril Poupon, Jean‐François Mangin, Pamela Guevara, Cecilia Hernández
Software Mentions: 2
Published: about 3 years ago
10.3389/fonc.2020.581037
Exploratory Analysis of Qualitative MR Imaging Features for the Differentiation of Glioblastoma and Brain MetastasesCited by: 6
Author(s): Raphael Meier, Aurélie Pahud de Mortanges, Roland Wiest, Urspeter Knecht
Software Mentions: 2
Published: almost 4 years ago
10.3389/fphys.2020.612590
Searching for Errors in Models of Complex Dynamic SystemsCited by: 1
Author(s): Dominik Kahl, Maik Kschischo
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13015-015-0059-z
A reconstruction problem for a class of phylogenetic networks with lateral gene transfersCited by: 11
Author(s): Gabriel Cardona, Joan Carles Pons, Francesc Rosselló
Software Mentions: 2
Published: almost 9 years ago
10.1038/s41598-020-63021-8
Network Systems Pharmacology-Based Mechanism Study on the Beneficial Effects of Vitamin D against Psychosis in Alzheimer’s DiseaseCited by: 7
Author(s): Peihao Fan, Xiguang Qi, Robert A. Sweet, Lirong Wang
Software Mentions: 2
Published: over 4 years ago
10.1007/s41109-017-0056-x
The evolving network of labor flows in the Stockholm RegionCited by: 3
Author(s): Hernan Mondani
Software Mentions: 2
Published: about 7 years ago
10.1007/s41109-018-0105-0
Identification of key films and personalities in the history of cinema from a Western perspectiveCited by: 6
Author(s): Livio Bioglio, Ruggero G. Pensa
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41396-020-0726-z
Modular prophage interactions driven by capsule serotype select for capsule loss under phage predationCited by: 37
Author(s): Jorge Moura de Sousa, Amandine Nucci, Matthieu Haudiquet, Eduardo P. C. Rocha, Olaya Rendueles
Software Mentions: 2
Published: over 4 years ago
10.1093/molbev/msab044
Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial TaxaCited by: 44
Author(s): Jorge Moura de Sousa, Eugen Pfeifer, Marie Touchon, Eduardo P. C. Rocha
Software Mentions: 2
Published: over 3 years ago
10.1038/srep28668
Network Modeling Identifies Patient-specific Pathways in GlioblastomaCited by: 25
Author(s): Nurcan Tunçbağ, Pamela Milani, Jenny L. Pokorny, Hannah Johnson, Terence T. Sio, Simona Dalin, Dennis O. Iyekegbe, Forest M. White, Jann N. Sarkaria, Ernest Fraenkel
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0132039
Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional ModulesCited by: 10
Author(s): Yasunobu Okamura, Takeshi Obayashi, Kengo Kinoshita
Software Mentions: 1
Published: over 9 years ago
10.3389/frai.2019.00007
An Artificial Intelligence Approach to Regulating Systemic RiskCited by: 14
Author(s): Sharyn O’Halloran, Nikolai Nowaczyk
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-015-1752-5
Transfer of energy pathway genes in microbial enhanced biological phosphorus removal communitiesCited by: 4
Author(s): Dennis Wong, Robert G. Beiko
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-020-59015-1
Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unitCited by: 12
Author(s): Amelieke J. H. Cremers, Jordy P. M. Coolen, Chantal P. Bleeker‐Rovers, A. D. J. van der Geest-Blankert, D. Haverkate, Harrie Hendriks, S. S. V. Henriet, MA Huynen, Eva Kolwijck, Djien Liem, W.J.G. Melchers, John W. A. Rossen, Jan Zoll, Arno van Heijst, Joost Hopman, Heiman Wertheim
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-61196-8
Organisational Social Influence on Directed Hierarchical Graphs, from Tyranny to AnarchyCited by: 9
Author(s): Charlie Pilgrim, Weisi Guo, Samuel Johnson
Software Mentions: 1
Published: over 4 years ago
10.1111/vox.12884
Collaborations on blood transfusion research in sub‐Saharan Africa: who, what and whereCited by: 6
Author(s): Amelia Fisher, S Wallis, Oliver Hassall, Russell J. Martin, Imelda Bates
Software Mentions: 1
Published: almost 5 years ago
10.1186/s12913-018-2898-z
Improving quality of care through patient-reported outcome measures (PROMs): expert interviews using the NHS PROMs Programme and the Swedish quality registers for knee and hip arthroplasty as examplesCited by: 45
Author(s): Birgit Prodinger, Paul C. Taylor
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12920-019-0492-9
Prioritization of genes involved in endothelial cell apoptosis by their implication in lymphedema using an analysis of associative gene networks with ANDSystemCited by: 12
Author(s): Olga V. Saik, Vadim Nimaev, Dilovarkhuja B. Usmonov, П. С. Деменков, T. V. Ivanisenko, Inna N. Lavrik, В. А. Иванисенко
Software Mentions: 1
Published: over 5 years ago
10.3390/ijerph17165707
Automatic Process Comparison for Subpopulations: Application in Cancer CareCited by: 5
Author(s): Francesca Marazza, Faiza Allah Bukhsh, Jeroen Geerdink, Onno Vijlbrief, Shreyasi Pathak, Maurice van Keulen, Christin Seifert
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0119309
The Complexity of Crime Network Data: A Case Study of Its Consequences for Crime Control and the Study of NetworksCited by: 47
Author(s): Amir Rostami, Hernan Mondani
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-020-80405-y
Chronic exposure of humans to high level natural background radiation leads to robust expression of protective stress response proteinsCited by: 4
Author(s): S Nishad, Pankaj Kumar Chauhan, R. Sowdhamini, Anu Ghosh
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0010779
Validation of Coevolving Residue Algorithms via Pipeline Sensitivity Analysis: ELSC and OMES and ZNMI, Oh My!Cited by: 28
Author(s): Christopher Brown, Kevin Brown
Software Mentions: 1
Published: over 14 years ago
10.3390/s17112514
Multipass Target Search in Natural EnvironmentsCited by: 8
Author(s): Michael J. Kuhlman, Michael W. Otte, Donald A. Sofge, Satyandra K. Gupta
Software Mentions: 1
Published: about 7 years ago
10.3390/s20030897
Networking-Aware IoT Application DevelopmentCited by: 6
Author(s): Arne Bröring, Jan Seeger, Manos Papoutsakis, Konstantinos Fysarakis, Ahmad Caracalli
Software Mentions: 1
Published: almost 5 years ago
10.1136/bmjopen-2019-034265
Can network science reveal structure in a complex healthcare system? A network analysis using data from emergency surgical servicesCited by: 14
Author(s): Katharina Köhler, Ari Ercole
Software Mentions: 1
Published: almost 5 years ago
10.7554/eLife.16965
Adaptation in protein fitness landscapes is facilitated by indirect pathsCited by: 162
Author(s): Nicholas C. Wu, Lei Dai, C. Anders Olson, James O. Lloyd‐Smith, Ren Sun
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pcbi.1003104
Neuronal Functional Connection Graphs among Multiple Areas of the Rat Somatosensory System during Spontaneous and Evoked ActivitiesCited by: 16
Author(s): Antonio G. Zippo, Riccardo Storchi, Sara Nencini, Gian Carlo Caramenti, Maurizio Valente, Gabriele Biella
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0240051
The parable of arable land: Characterizing large scale land acquisitions through network analysisCited by: 8
Author(s): Roberto Interdonato, Jérémy Bourgoin, Quentin Grislain, Matteo Zignani, Sabrina Gaito, Markus Giger
Software Mentions: 1
Published: about 4 years ago