pypi: networkx | Projects | Ecosyste.ms: Papers

10.7554/eLife.55913

An image-based data-driven analysis of cellular architecture in a developing tissue
Cited by: 22
Author(s): Jonas Hartmann, Mie Wong, Elisa Cristina de Proença Rodrigues Gallo, Darren Gilmour
Software Mentions: 14
Published: over 4 years ago

10.1186/s13059-021-02264-8

GeneWalk identifies relevant gene functions for a biological context using network representation learning
Cited by: 26
Author(s): Robert Ietswaart, Benjamin M. Gyori, John A. Bachman, Peter K. Sorger, L. Stirling Churchman
Software Mentions: 14
Published: almost 4 years ago

10.1186/s13321-020-00455-2

spyrmsd: symmetry-corrected RMSD calculations in Python
Cited by: 23
Author(s): Rocco Meli, Philip C. Biggin
Software Mentions: 13
Published: about 4 years ago

10.1186/s12859-021-04057-z

Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data
Cited by: 21
Author(s): Hao Chen, Yan Lu, Dongsheng Lu, Shuhua Xu
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pone.0225900

PyRates—A Python framework for rate-based neural simulations
Cited by: 10
Author(s): Richard Gast, Daniel Rose, Christoph Salomon, Harald E. Möller, Nikolaus Weiskopf, Thomas R. Knösche
Software Mentions: 12
Published: almost 5 years ago

10.1128/mSystems.00903-19

manta: a Clustering Algorithm for Weighted Ecological Networks
Cited by: 7
Author(s): Lisa Röttjers, Karoline Faust
Software Mentions: 12
Published: over 4 years ago

10.1186/s41044-019-0043-6

A substrate for modular, extensible data-visualization
Cited by: 6
Author(s): Jordan Matelsky, Joseph Downs, Hannah Cowley, Brock Wester, William Gray-Roncal
Software Mentions: 11
Published: over 4 years ago

10.1186/s13062-018-0214-9

Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach
Cited by: 13
Author(s): Léon-Charles Tranchevent, Petr V. Nazarov, Tony Kaoma, Georges Pierre Schmartz, Arnaud Muller, Sang Yoon Kim, Jagath C. Rajapakse, Francisco Azuaje
Software Mentions: 10
Published: almost 7 years ago

10.1186/s12920-019-0628-y

A deep neural network approach to predicting clinical outcomes of neuroblastoma patients
Cited by: 14
Author(s): Léon-Charles Tranchevent, Francisco Azuaje, Jagath C. Rajapakse
Software Mentions: 10
Published: almost 5 years ago

10.1029/2019EA001004

Open‐Source Software Analysis Tool to Investigate Space Plasma Turbulence and Nonlinear DYNamics (ODYN)
Cited by: 6
Author(s): E. Teodorescu, Marius Echim
Software Mentions: 10
Published: over 4 years ago

10.1016/j.cell.2021.07.017

Whole-body integration of gene expression and single-cell morphology
Cited by: 59
Author(s): Hernando Vergara, Constantin Pape, Kimberly Meechan, Valentyna Zinchenko, Christel Genoud, Adrian Wanner, Kevin Nzumbi Mutemi, Benjamin Titze, Rachel Templin, Paola Bertucci, Oleg Simakov, Wiebke Dürichen, Pedro Machado, Emily L. Savage, Lothar Schermelleh, Yannick Schwab, Rainer W. Friedrich, Anna Kreshuk, Christian Tischer, Detlev Arendt
Software Mentions: 10
Published: about 3 years ago

10.3390/md18100515

Applying a Chemogeographic Strategy for Natural Product Discovery from the Marine Cyanobacterium Moorena bouillonii
Cited by: 6
Author(s): Christopher A. Leber, C. Benjamin Naman, Lena Keller, Jehad Almaliti, Eduardo J. E. Caro‐Diaz, Evgenia Glukhov, V. Joseph, Sajeevan Thavarool Puthiyedathu, Andres Joshua Reyes, Jason S. Biggs, Te Li, Ye Yuan, Shan He, Xiaojun Yan, William H. Gerwick
Software Mentions: 10
Published: about 4 years ago

10.1093/bioinformatics/btaa201

Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF
Cited by: 37
Author(s): Meenakshi Venkatasubramanian, Kashish Chetal, Daniel Schnell, Gowtham Atluri, Nathan Salomonis
Software Mentions: 10
Published: over 4 years ago

10.1126/sciadv.abg1921

Environmental vulnerability of the global ocean epipelagic plankton community interactome
Cited by: 47
Author(s): Samuel Chaffron, Erwan Delage, Marko Budinich, Damien Vintache, Nicolas Henry, Charlotte Nef, Mathieu Ardyna, Ahmed A. Zayed, Pedro C. Junger, Pierre E. Galand, Connie Lovejoy, Alison E. Murray, Hugo Sarmento, Tara Oceans Coordinators, Silvia G. Acinas, Marcel Babin, Daniele Iudicone, Olivier Jaillon, Eric Karsenti, Patrick Wincker, Lee Karp‐Boss, Matthew B. Sullivan, Chris Bowler, Colomban de Vargas, Damien Eveillard
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.pone.0078009

Frequency Response and Gap Tuning for Nonlinear Electrical Oscillator Networks
Cited by: 0
Author(s): Harish S. Bhat, Garnet J. Vaz
Software Mentions: 9
Published: about 11 years ago

10.1186/s12859-014-0408-9

Kiwi: a tool for integration and visualization of network topology and gene-set analysis
Cited by: 12
Author(s): Leif Väremo, Francesco Gatto, Jens Nielsen
Software Mentions: 9
Published: almost 10 years ago

10.1371/journal.pcbi.1007832

Flux-based hierarchical organization of Escherichia coli’s metabolic network
Cited by: 2
Author(s): Semidán Robaina-Estévez, Zoran Nikoloski
Software Mentions: 8
Published: over 4 years ago

10.7554/eLife.66747

Mapping single-cell atlases throughout Metazoa unravels cell type evolution
Cited by: 98
Author(s): Alexander J. Tarashansky, Jacob M. Musser, Margarita Khariton, Pengyang Li, Detlev Arendt, Stephen R. Quake, Bo Wang
Software Mentions: 8
Published: over 3 years ago

10.1107/S2059798318004576

<i>KAMO</i>: towards automated data processing for microcrystals
Cited by: 174
Author(s): Keitaro Yamashita, Kunio Hirata, Masaki Yamamoto
Software Mentions: 8
Published: over 6 years ago

10.7554/eLife.53281

Feedback inhibition and its control in an insect olfactory circuit
Cited by: 8
Author(s): Subhasis Ray, Zane Aldworth, Mark Stopfer
Software Mentions: 7
Published: over 4 years ago

10.1186/s12864-017-4268-3

GHOST: global hepatitis outbreak and surveillance technology
Cited by: 32
Author(s): Atkinson G. Longmire, Seth Sims, Inna Rytsareva, David S. Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, Yury Khudyakov
Software Mentions: 7
Published: almost 7 years ago

10.1038/s41598-021-94105-8

Sublinear domination and core–periphery networks
Cited by: 1
Author(s): Marios Papachristou
Software Mentions: 6
Published: over 3 years ago

10.3389/fimmu.2018.00224

Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires
Cited by: 146
Author(s): Enkelejda Miho, Alexander Yermanos, Cédric R. Weber, Christoph T. Berger, Sai T. Reddy, Victor Greiff
Software Mentions: 6
Published: over 6 years ago

10.1186/s12920-019-0581-9

The caudate nucleus undergoes dramatic and unique transcriptional changes in human prodromal Huntington’s disease brain
Cited by: 26
Author(s): Filisia Agus, Diego Crespo, Richard H. Myers, Adam Labadorf
Software Mentions: 6
Published: about 5 years ago

10.3389/fninf.2014.00034

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages
Cited by: 45
Author(s): Juan Nunez-Iglesias, Ryan Kennedy, Stephen M. Plaza, Anirban Chakraborty, William T. Katz
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pone.0187091

DiffSLC: A graph centrality method to detect essential proteins of a protein-protein interaction network
Cited by: 43
Author(s): Divya Mistry, Roger P. Wise, Julie A. Dickerson
Software Mentions: 6
Published: about 7 years ago

10.1186/1751-0473-3-10

Flow: Statistics, visualization and informatics for flow cytometry
Cited by: 11
Author(s): Jacob Frelinger, Thomas B. Kepler, Cliburn Chan
Software Mentions: 6
Published: over 16 years ago

10.1186/s12859-018-2092-7

An interpretable framework for clustering single-cell RNA-Seq datasets
Cited by: 46
Author(s): Jesse M. Zhang, Jue Fan, H. Christina Fan, David Rosenfeld, David Tse
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-020-03769-y

C3: connect separate connected components to form a succinct disease module
Cited by: 6
Author(s): Bingbo Wang, Jie Hu, Yajun Wang, Chenxing Zhang, Yuanjun Zhou, Liang Yu, Guo Xia-zhen, Lin Gao, Yunru Chen
Software Mentions: 5
Published: about 4 years ago

10.1186/s12859-019-3004-1

mycelyso – high-throughput analysis of Streptomyces mycelium live cell imaging data
Cited by: 3
Author(s): Christian Carsten Sachs, Joachim Koepff, Wolfgang Wiechert, Alexander Grünberger, Katharina Nöh
Software Mentions: 5
Published: about 5 years ago

10.1186/s12864-018-4704-z

OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
Cited by: 6
Author(s): Michael Dunne, Steven Kelly
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0252862

Approaches to measure class importance in Knowledge Graphs
Cited by: 2
Author(s): Daniel Fernández-Álvarez, Johannes Frey, José Emilio Labra Gayo, Daniel Gayo-Avello, Sebastian Hellmann
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-020-02247-1

Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences
Cited by: 22
Author(s): Caroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky
Software Mentions: 5
Published: almost 4 years ago

10.1093/gigascience/gix111

ProphTools: general prioritization tools for heterogeneous biological networks
Cited by: 10
Author(s): Carmen Navarro, Víctor R. Martínez, Armando Blanco, Carlos Cano
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-017-06355-0

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity
Cited by: 5
Author(s): Prashanna Balaji Venkatasubramanian, Gamze Toydemir, Nicole de Wit, Edoardo Saccenti, Vítor A. P. Martins dos Santos, Peter van Baarlen, Jerry M. Wells, María Suárez-Diez, Jurriaan J. Mes
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-77364-9

A potential energy and mutual information based link prediction approach for bipartite networks
Cited by: 7
Author(s): Purushottam Kumar, Dolly Sharma
Software Mentions: 5
Published: almost 4 years ago

10.1128/mBio.02691-19

Modeling of the Coral Microbiome: the Influence of Temperature and Microbial Network
Cited by: 25
Author(s): Laís Farias Oliveira Lima, Maya Weissman, Micheal Reed, Bhavya Papudeshi, Amanda T. Alker, Megan M. Morris, Robert A. Edwards, Samantha J. de Putron, Naveen K. Vaidya, Elizabeth A. Dinsdale
Software Mentions: 5
Published: over 4 years ago

10.1128/mSystems.00913-20

Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation Mechanisms
Cited by: 23
Author(s): Nicole Pearcy, Yue Hu, Michelle Baker, Alexandre Maciel-Guerra, Ning Xue, Wei Wang, Jasmeet Kaler, Zong–Gen Peng, Fengqin Li, Tania Dottorini
Software Mentions: 5
Published: about 3 years ago

10.7554/eLife.71393

Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies
Cited by: 18
Author(s): Angela M Phillips, Katherine R. Lawrence, Alief Moulana, Thomas Dupic, Jeffrey S. Chang, Milo S. Johnson, Ivana Cvijović, Thierry Mora, Aleksandra M. Walczak, Michael M. Desai
Software Mentions: 5
Published: about 3 years ago

10.1186/s12859-015-0570-8

Domain similarity based orthology detection
Cited by: 12
Author(s): Tristan Bitard‐Feildel, Carsten Kemena, Jenny M. Greenwood, Erich Bornberg‐Bauer
Software Mentions: 4
Published: over 9 years ago

10.1186/s12863-016-0388-z

Rare sex or out of reach equilibrium? The dynamics of F IS in partially clonal organisms
Cited by: 40
Author(s): Katja Reichel, Jean-Pierre Masson, Florent Malrieu, Sophie Arnaud‐Haond, Solenn Stoeckel
Software Mentions: 4
Published: over 8 years ago

10.1074/mcp.O117.067728

Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences
Cited by: 62
Author(s): Bo Zhang, Mohammad Pirmoradian, Roman A. Zubarev, Lukas Käll
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1008003

Biological network growth in complex environments: A computational framework
Cited by: 6
Author(s): Torsten Johann Paul, Philip Kollmannsberger
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13015-015-0061-5

Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics
Cited by: 7
Author(s): Katja Reichel, Valentin Bahier, Cédric Midoux, Nicolas Parisey, Jean-Pierre Masson, Solenn Stoeckel
Software Mentions: 4
Published: almost 9 years ago

10.7554/eLife.54082

Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacity
Cited by: 10
Author(s): Tarun Kumar, Leo Blondel, Cassandra G. Extavour
Software Mentions: 4
Published: about 4 years ago

10.1186/s12859-019-3076-y

DeepEP: a deep learning framework for identifying essential proteins
Cited by: 36
Author(s): Min Zeng, Min Li, Fang‐Xiang Wu, Yaohang Li, Yi Pan
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-78352-9

Eight years of homicide evolution in Monterrey, Mexico: a network approach
Cited by: 1
Author(s): Rodrigo Dorantes-Gilardi, Diana García-Cortés, Hiram Hernández-Ramos, Jesús Espinal-Enríquez
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-74775-6

A digital reconstruction of the 1630–1631 large plague outbreak in Venice
Cited by: 6
Author(s): Gianrocco Lazzari, Giovanni Colavizza, Fabio Bortoluzzi, Davide Drago, Andrea Erboso, Francesca Zugno, Frédé́ric Kaplan, Marcel Salathé
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-67523-3

Horseback riding pathways and harbors at the beginning of the colonial era in Mexico
Cited by: 1
Author(s): Igor Lugo, Martha G. Alatriste‐Contreras
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-019-50790-0

Signal flow control of complex signaling networks
Cited by: 6
Author(s): Daewon Lee, Kwang-Hyun Cho
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1004478

Evolution of Intra-specific Regulatory Networks in a Multipartite Bacterial Genome
Cited by: 37
Author(s): Marco Galardini, Matteo Brilli, Giulia Spini, Matteo Rossi, Bianca Roncaglia, Aïda Bani, Chiancianesi Manuela, Marco Moretto, Kristof Engelen, Giovanni Bacci, Francesco Pini, Emanuele G. Biondi, Marco Bazzicalupo, Alessio Mengoni
Software Mentions: 4
Published: about 9 years ago

10.3389/fgene.2021.617505

Gene-Microbiome Co-expression Networks in Colon Cancer
Cited by: 5
Author(s): Irving Uriarte-Navarrete, Enrique Hernández‐Lemus, Guillermo de Anda-Jáuregui
Software Mentions: 3
Published: over 3 years ago

10.12688/f1000research.2-130.v3

An a posteriori measure of network modularity
Cited by: 5
Author(s): Timothée Poisot
Software Mentions: 3
Published: almost 11 years ago

10.1186/s40478-018-0574-5

RNA binding proteins co-localize with small tau inclusions in tauopathy
Cited by: 99
Author(s): Brandon F. Maziuk, Daniel J. Apicco, Anna Lourdes Cruz, Lulu Jiang, Peter E.A. Ash, Edroaldo Lummertz da Rocha, Cheng Zhang, Wen H. Yu, John D. Leszyk, Jose F. Abisambra, Li Hu, Benjamin Wolozin
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj-cs.679

Approximate spectral clustering using both reference vectors and topology of the network generated by growing neural gas
Cited by: 1
Author(s): Kazuhisa Fujita
Software Mentions: 3
Published: about 3 years ago

10.7717/peerj-cs.262

Legal document similarity: a multi-criteria decision-making perspective
Cited by: 10
Author(s): Rupali Wagh, D. K. Anand
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj-cs.389

FNG-IE: an improved graph-based method for keyword extraction from scholarly big-data
Cited by: 5
Author(s): Noman Tahir, Muhammad Asif, Shahbaz Ahmad, Muhammad Sheraz Arshad Malik, Hanan Aljuaid, Muhammad Arif Butt, Mobashar Rehman
Software Mentions: 3
Published: over 3 years ago

10.1093/gigascience/giaa029

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle
Cited by: 40
Author(s): Edward S. Rice, Sergey Koren, Arang Rhie, Michael P. Heaton, Theodore S. Kalbfleisch, Timothy Hardy, Peter H. Hackett, Derek M. Bickhart, Benjamin D. Rosen, B. L. Vander Ley, Nicholas Maurer, Edward Green, Adam M. Phillippy, Jessica L. Petersen, Timothy P. L. Smith
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0226481

Connectivity differences between Gulf War Illness (GWI) phenotypes during a test of attention
Cited by: 4
Author(s): Tomas Clarke, Jessie D. Jamieson, Patrick S. Malone, Rakib U. Rayhan, Stuart D. Washington, John W. VanMeter, James N. Baraniuk
Software Mentions: 3
Published: almost 5 years ago

10.3389/fphar.2020.00187

Repositioning of Hypoglycemic Drug Linagliptin for Cancer Treatment
Cited by: 8
Author(s): Yong Li, Yiqun Li, Dengke Li, Kaiming Li, Quan Zhengyang, Ziyi Wang, Zhenxiao Sun
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-23931-0

Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience
Cited by: 98
Author(s): Dinka Mandaković, Claudia Rojas, Jonathan Maldonado, Mauricio Latorre, Dante Travisany, Erwan Delage, Audrey Bihouée, Géraldine Jean, Francisco Javier Mato Díaz, Beatriz Fernández-Gómez, Pablo J. Cabrera, Alexis Gaete, Claudio Latorre, Rodrigo A. Gutiérrez, Alejandro Maass, Verónica Cambiazo, Sergio A. Navarrete, Damien Eveillard, Maurício González
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2017.00165

New Tools in Orthology Analysis: A Brief Review of Promising Perspectives
Cited by: 55
Author(s): Bruno Thiago de Lima Nichio, Jeroniza Nunes Marchaukoski, Roberto Tadeu Raittz
Software Mentions: 3
Published: about 7 years ago

10.1021/acssynbio.0c00318

Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial Colonies
Cited by: 11
Author(s): Salva Duran-Nebreda, Jordi Pla, Blai Vidiella, Jordi Piñero, Núria Conde-Pueyo, Ricard V. Solé
Software Mentions: 3
Published: almost 4 years ago

10.3897/CompCytogen.v12i4.31015

Pilot satellitome analysis of the model plant, Physcomitrella patens, revealed a transcribed and high-copy IGS related tandem repeat
Cited by: 20
Author(s): Ilya Kirov, Marina Gilyok, Andrey Knyazev, Igor Fesenko
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13062-015-0058-5

Design principles for cancer therapy guided by changes in complexity of protein-protein interaction networks
Cited by: 25
Author(s): Sébastien Benzekry, Jack A. Tuszyński, Edward A. Rietman, Giannoula Klement
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pcbi.1009375

Reconstructing contact network structure and cross-immunity patterns from multiple infection histories
Cited by: 0
Author(s): Christian Selinger, Samuel Alizon
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1004468

Comprehensive Meta-analysis of Ontology Annotated 16S rRNA Profiles Identifies Beta Diversity Clusters of Environmental Bacterial Communities
Cited by: 21
Author(s): Andreas Henschel, Muhammad Zohaib Anwar, Vimitha Manohar
Software Mentions: 2
Published: about 9 years ago

10.1186/s12917-016-0652-5

A descriptive analysis of the growth of unrecorded interactions amongst cattle-raising premises in Scotland and their implications for disease spread
Cited by: 4
Author(s): Jessica Enright, Rowland R. Kao
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0041430

Mapping the Mutual Information Network of Enzymatic Families in the Protein Structure to Unveil Functional Features
Cited by: 34
Author(s): Daniel Aguilar, Baldo Oliva, Cristina Marino-Buslje
Software Mentions: 2
Published: over 12 years ago

10.3389/fdata.2021.666712

Functional Structure in Production Networks
Cited by: 7
Author(s): Carolina Mattsson, Frank W. Takes, Eelke M. Heemskerk, Cees Diks, Gert Buiten, Albert Faber, P.M.A. Sloot
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2019.02389

Fine-Scale Biogeography and the Inference of Ecological Interactions Among Neutrophilic Iron-Oxidizing Zetaproteobacteria as Determined by a Rule-Based Microbial Network
Cited by: 6
Author(s): Katherine Duchinski, Craig L. Moyer, Kyle R. Hager, Heather Fullerton
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2021.739844

Rhizosphere Microbial Communities Are Significantly Affected by Optimized Phosphorus Management in a Slope Farming System
Cited by: 12
Author(s): Qianxin Deng, Tong Zhang, Deti Xie, Yang Yong
Software Mentions: 2
Published: about 3 years ago

10.3389/fninf.2021.727859

Fiber Clustering Acceleration With a Modified Kmeans++ Algorithm Using Data Parallelism
Cited by: 7
Author(s): Isaac Goicovich, Paulo Olivares, Claudio Román, Andrea Vázquez, Cyril Poupon, Jean‐François Mangin, Pamela Guevara, Cecilia Hernández
Software Mentions: 2
Published: about 3 years ago

10.3389/fonc.2020.581037

Exploratory Analysis of Qualitative MR Imaging Features for the Differentiation of Glioblastoma and Brain Metastases
Cited by: 6
Author(s): Raphael Meier, Aurélie Pahud de Mortanges, Roland Wiest, Urspeter Knecht
Software Mentions: 2
Published: almost 4 years ago

10.3389/fphys.2020.612590

Searching for Errors in Models of Complex Dynamic Systems
Cited by: 1
Author(s): Dominik Kahl, Maik Kschischo
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13015-015-0059-z

A reconstruction problem for a class of phylogenetic networks with lateral gene transfers
Cited by: 11
Author(s): Gabriel Cardona, Joan Carles Pons, Francesc Rosselló
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-020-63021-8

Network Systems Pharmacology-Based Mechanism Study on the Beneficial Effects of Vitamin D against Psychosis in Alzheimer’s Disease
Cited by: 7
Author(s): Peihao Fan, Xiguang Qi, Robert A. Sweet, Lirong Wang
Software Mentions: 2
Published: over 4 years ago

10.1007/s41109-017-0056-x

The evolving network of labor flows in the Stockholm Region
Cited by: 3
Author(s): Hernan Mondani
Software Mentions: 2
Published: about 7 years ago

10.1007/s41109-018-0105-0

Identification of key films and personalities in the history of cinema from a Western perspective
Cited by: 6
Author(s): Livio Bioglio, Ruggero G. Pensa
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41396-020-0726-z

Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation
Cited by: 37
Author(s): Jorge Moura de Sousa, Amandine Nucci, Matthieu Haudiquet, Eduardo P. C. Rocha, Olaya Rendueles
Software Mentions: 2
Published: over 4 years ago

10.1093/molbev/msab044

Causes and Consequences of Bacteriophage Diversification via Genetic Exchanges across Lifestyles and Bacterial Taxa
Cited by: 44
Author(s): Jorge Moura de Sousa, Eugen Pfeifer, Marie Touchon, Eduardo P. C. Rocha
Software Mentions: 2
Published: over 3 years ago

10.1038/srep28668

Network Modeling Identifies Patient-specific Pathways in Glioblastoma
Cited by: 25
Author(s): Nurcan Tunçbağ, Pamela Milani, Jenny L. Pokorny, Hannah Johnson, Terence T. Sio, Simona Dalin, Dennis O. Iyekegbe, Forest M. White, Jann N. Sarkaria, Ernest Fraenkel
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0132039

Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules
Cited by: 10
Author(s): Yasunobu Okamura, Takeshi Obayashi, Kengo Kinoshita
Software Mentions: 1
Published: over 9 years ago

10.3389/frai.2019.00007

An Artificial Intelligence Approach to Regulating Systemic Risk
Cited by: 14
Author(s): Sharyn O’Halloran, Nikolai Nowaczyk
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-1752-5

Transfer of energy pathway genes in microbial enhanced biological phosphorus removal communities
Cited by: 4
Author(s): Dennis Wong, Robert G. Beiko
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-59015-1

Surveillance-embedded genomic outbreak resolution of methicillin-susceptible Staphylococcus aureus in a neonatal intensive care unit
Cited by: 12
Author(s): Amelieke J. H. Cremers, Jordy P. M. Coolen, Chantal P. Bleeker‐Rovers, A. D. J. van der Geest-Blankert, D. Haverkate, Harrie Hendriks, S. S. V. Henriet, MA Huynen, Eva Kolwijck, Djien Liem, W.J.G. Melchers, John W. A. Rossen, Jan Zoll, Arno van Heijst, Joost Hopman, Heiman Wertheim
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61196-8

Organisational Social Influence on Directed Hierarchical Graphs, from Tyranny to Anarchy
Cited by: 9
Author(s): Charlie Pilgrim, Weisi Guo, Samuel Johnson
Software Mentions: 1
Published: over 4 years ago

10.1111/vox.12884

Collaborations on blood transfusion research in sub‐Saharan Africa: who, what and where
Cited by: 6
Author(s): Amelia Fisher, S Wallis, Oliver Hassall, Russell J. Martin, Imelda Bates
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12913-018-2898-z

Improving quality of care through patient-reported outcome measures (PROMs): expert interviews using the NHS PROMs Programme and the Swedish quality registers for knee and hip arthroplasty as examples
Cited by: 45
Author(s): Birgit Prodinger, Paul C. Taylor
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12920-019-0492-9

Prioritization of genes involved in endothelial cell apoptosis by their implication in lymphedema using an analysis of associative gene networks with ANDSystem
Cited by: 12
Author(s): Olga V. Saik, Vadim Nimaev, Dilovarkhuja B. Usmonov, П. С. Деменков, T. V. Ivanisenko, Inna N. Lavrik, В. А. Иванисенко
Software Mentions: 1
Published: over 5 years ago

10.3390/ijerph17165707

Automatic Process Comparison for Subpopulations: Application in Cancer Care
Cited by: 5
Author(s): Francesca Marazza, Faiza Allah Bukhsh, Jeroen Geerdink, Onno Vijlbrief, Shreyasi Pathak, Maurice van Keulen, Christin Seifert
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0119309

The Complexity of Crime Network Data: A Case Study of Its Consequences for Crime Control and the Study of Networks
Cited by: 47
Author(s): Amir Rostami, Hernan Mondani
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-80405-y

Chronic exposure of humans to high level natural background radiation leads to robust expression of protective stress response proteins
Cited by: 4
Author(s): S Nishad, Pankaj Kumar Chauhan, R. Sowdhamini, Anu Ghosh
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0010779

Validation of Coevolving Residue Algorithms via Pipeline Sensitivity Analysis: ELSC and OMES and ZNMI, Oh My!
Cited by: 28
Author(s): Christopher Brown, Kevin Brown
Software Mentions: 1
Published: over 14 years ago

10.3390/s17112514

Multipass Target Search in Natural Environments
Cited by: 8
Author(s): Michael J. Kuhlman, Michael W. Otte, Donald A. Sofge, Satyandra K. Gupta
Software Mentions: 1
Published: about 7 years ago

10.3390/s20030897

Networking-Aware IoT Application Development
Cited by: 6
Author(s): Arne Bröring, Jan Seeger, Manos Papoutsakis, Konstantinos Fysarakis, Ahmad Caracalli
Software Mentions: 1
Published: almost 5 years ago

10.1136/bmjopen-2019-034265

Can network science reveal structure in a complex healthcare system? A network analysis using data from emergency surgical services
Cited by: 14
Author(s): Katharina Köhler, Ari Ercole
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.16965

Adaptation in protein fitness landscapes is facilitated by indirect paths
Cited by: 162
Author(s): Nicholas C. Wu, Lei Dai, C. Anders Olson, James O. Lloyd‐Smith, Ren Sun
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pcbi.1003104

Neuronal Functional Connection Graphs among Multiple Areas of the Rat Somatosensory System during Spontaneous and Evoked Activities
Cited by: 16
Author(s): Antonio G. Zippo, Riccardo Storchi, Sara Nencini, Gian Carlo Caramenti, Maurizio Valente, Gabriele Biella
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0240051

The parable of arable land: Characterizing large scale land acquisitions through network analysis
Cited by: 8
Author(s): Roberto Interdonato, Jérémy Bourgoin, Quentin Grislain, Matteo Zignani, Sabrina Gaito, Markus Giger
Software Mentions: 1
Published: about 4 years ago

Projects: pypi: networkx

Papers Mentioning networkx 110